CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16008
CDY21055
CDY26568
CDY58614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31955.1	CDY16008	AT1G12520.1	21798944
AT2G31955.1	CDY21055	AT1G12520.1	21798944
AT2G31955.1	CDY26568	AT1G12520.1	21798944
AT2G31955.1	CDY58614	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022872.1-P	Field mustard	mitochondrion	98.39	98.39
CDX84751	Canola	mitochondrion	98.39	98.39
AT2G31955.1	Thale cress	cytosol	86.6	82.82
PGSC0003DMT400074537	Potato	cytosol	73.73	79.25
KRH13856	Soybean	mitochondrion	77.21	72.0
KRH43566	Soybean	cytosol, mitochondrion, plastid	76.68	71.5
Os02t0258900-01	Rice	mitochondrion	73.99	70.05
KXG30456	Sorghum	mitochondrion	73.73	69.8
Solyc01g073730.2.1	Tomato	nucleus	73.99	69.52
Os12t0507000-01	Rice	mitochondrion	73.99	69.17
Zm00001d016866_P001	Maize	mitochondrion	73.73	67.73
GSMUA_Achr1P19680_001	Banana	mitochondrion	73.46	67.32
VIT_13s0156g00170.t01	Wine grape	cytosol	79.62	59.4
TraesCS5B01G066700.1	Wheat	mitochondrion	71.85	57.27
TraesCS5A01G059400.1	Wheat	mitochondrion	71.58	57.05
TraesCS5D01G070900.1	Wheat	mitochondrion	71.05	56.03
HORVU5Hr1G014920.3	Barley	mitochondrion	66.49	51.77
CDY42083	Canola	extracellular, mitochondrion	17.96	46.53

Protein Annotations

KEGG:00790+4.1.99.18	KEGG:00790+4.1.99.22	Gene3D:3.20.20.70	MapMan:7.1.1.1	GO:A0A078CRS9	InterPro:Aldolase_TIM
EnsemblPlants:CDX79447	ProteinID:CDX79447	ProteinID:CDX79447.1	InterPro:Elp3/MiaB/NifB	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006777	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019008	GO:GO:0019538	GO:GO:0046872	GO:GO:0051536
GO:GO:0051539	EnsemblPlantsGene:GSBRNA2T00132179001	InterPro:IPR013785	HAMAP:MF_01225_B	InterPro:Main_SPASM_domain-containing	InterPro:MoaA
InterPro:MoaA_NifB_PqqE_Fe-S-bd_CS	InterPro:Mob_synth_C	PFAM:PF04055	PFAM:PF06463	PFAM:PF13353	ScanProsite:PS01305
PANTHER:PTHR22960	PANTHER:PTHR22960:SF0	MetaCyc:PWY-6823	SMART:SM00729	InterPro:SPASM/twitch_domain-containing	SUPFAM:SSF102114
TIGRFAMs:TIGR02666	UniPathway:UPA00344	UniParc:UPI0004EE308C	InterPro:rSAM	:	:

Description

BnaC03g17830D

Coordinates

chrLK031818:-:91825..94378

Molecular Weight (calculated)

41455.5 Da

IEP (calculated)

9.371

GRAVY (calculated)

-0.183

Length

373 amino acids

Sequence
(BLAST)

001: MRRCLSKLTP RQMGFTNSTS FLAGSKNITT TSNAAQVDQT KHSSVSDMLV DSFGRFHTYL RISLTERCNL RCQYCMPSEG VELTPKPQLL SQSEIVRLAG
101: LFVSSGVNKI RLTGGEPTVR KDIEDICMQL SSLKGLKNLA ITTNGITLAR KLPKLKECGL DSINISLDTL VPAKFEFLTR RKGHERVMQS IDSAIALGYN
201: PVKVNCVVMR GLNDEEICDF VELTRDKPIN VRFIEFMPFD GNVWNVKKLV SYAEMMDKVV KRFPSIKRVQ DHPTETAKNF TIDGHCGSVS FITSMTEHFC
301: SGCNRLRLLA DGNFKVCLFG PSEVSLRDPI RSGADDETLR EIIGAAVKRK KAAHAGMLDI AKTANRPMIH IGG

Best Arabidopsis Sequence Match ( AT2G31955.1 )
(BLAST)

001: MRRCFSKITD CHLGFKNSNF LLVGSEVGSG SVTRTITTTT SERLFSSSYA AHQVDQIKDN PVSDMLIDKF GRLHTYLRIS LTERCNLRCQ YCMPSEGVEL
101: TPKPQLLSQS EIVRLAGLFV SAGVNKIRLT GGEPTVRKDI EEICLQLSSL KGLKNLAITT NGITLAKKLP RLKECGLDSL NISLDTLVPA KFEFLTRRKG
201: HDRVMKSIDT AIELGYNPVK VNCVIMRGLN DDEICDFVEL TRDKPINVRF IEFMPFDGNV WNVKKLVPYA EVMDKVVKRF PSIKRMQDHP TETAKNFTID
301: GHCGSVSFIT SMTEHFCAGC NRLRLLADGN FKVCLFGPSE VSLRDPLRSG ADDEALREII GAAVKRKKAA HAGMLDIAKT ANRPMIHIGG

Arabidopsis Description

CNX2CNX2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.