CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU82186

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31955.1	OQU82186	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016866_P001	Maize	mitochondrion	97.72	94.83
Os12t0507000-01	Rice	mitochondrion	83.76	82.71
Os02t0258900-01	Rice	mitochondrion	81.47	81.47
PGSC0003DMT400074537	Potato	cytosol	70.3	79.83
GSMUA_Achr1P19680_001	Banana	mitochondrion	76.4	73.96
CDX79447	Canola	mitochondrion	69.8	73.73
CDX84751	Canola	mitochondrion	69.54	73.46
Bra022872.1-P	Field mustard	mitochondrion	69.54	73.46
Solyc01g073730.2.1	Tomato	nucleus	70.81	70.28
AT2G31955.1	Thale cress	cytosol	69.54	70.26
KRH13856	Soybean	mitochondrion	70.56	69.5
TraesCS5A01G059400.1	Wheat	mitochondrion	82.49	69.44
KRH43566	Soybean	cytosol, mitochondrion, plastid	70.3	69.25
TraesCS5B01G066700.1	Wheat	mitochondrion	81.98	69.02
TraesCS5D01G070900.1	Wheat	mitochondrion	81.47	67.86
HORVU5Hr1G014920.3	Barley	mitochondrion	75.38	62.0
VIT_13s0156g00170.t01	Wine grape	cytosol	71.32	56.2
CDY42083	Canola	extracellular, mitochondrion	14.47	39.58

Protein Annotations

KEGG:00790+4.1.99.22	Gene3D:3.20.20.70	MapMan:7.1.1.1	UniProt:A0A194YQI7	InterPro:Aldolase_TIM	InterPro:Elp3/MiaB/NifB
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006777	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019008	GO:GO:0019538	GO:GO:0046872	GO:GO:0051536	GO:GO:0051539
InterPro:IPR013785	EnsemblPlants:KXG30456	ProteinID:KXG30456	ProteinID:KXG30456.1	HAMAP:MF_01225_B	InterPro:Main_SPASM_domain-containing
InterPro:MoaA	InterPro:MoaA_NifB_PqqE_Fe-S-bd_CS	InterPro:Mob_synth_C	PFAM:PF04055	PFAM:PF06463	PFAM:PF13353
ScanProsite:PS01305	PANTHER:PTHR22960	PANTHER:PTHR22960:SF0	SMART:SM00729	EnsemblPlantsGene:SORBI_3004G183600	InterPro:SPASM/twitch_domain-containing
SUPFAM:SSF102114	TIGRFAMs:TIGR02666	UniParc:UPI0001C80D49	InterPro:rSAM	:	:

Description

hypothetical protein

Coordinates

chr4:-:53700842..53708912

Molecular Weight (calculated)

43920.5 Da

IEP (calculated)

8.901

GRAVY (calculated)

-0.197

Length

394 amino acids

Sequence
(BLAST)

001: MMRRCVSELA RRRRPDRTVD TMKAGFQCLV NVSSSIRATD SQRCSSTCAT SCATDPDVLS RETSSSSEML VDSFGRFHNY LRISLTERCN LRCQYCMPAE
101: GVELTPKSEL LSHDEIIRIA DLFVTSGVNK IRLTGGEPTI RKDIEDICLH LSGLKGLKTL AMTTNGIVLS KKLPKLKECG LNALNISLDT LVPAKFEFMT
201: RRKGHSKVLE SIDAAVELGY SPVKVNCVIM RGINDDEICN FVELTRHKPI NVRFIEFMPF DGNVWNVKKL VPYAEMLDKV RQSYKGVERL QDHPTDTAKN
301: FRIDGHVGTI SFITSMTEHF CAGCNRLRLL ADGNFKVCLF GPSEVSLREP IRTGVDDAGL KEIIGAAVKR KKAKHAGMFD IAKTANRPMI HIGG

Best Arabidopsis Sequence Match ( AT2G31955.1 )
(BLAST)

001: MRRCFSKITD CHLGFKNSNF LLVGSEVGSG SVTRTITTTT SERLFSSSYA AHQVDQIKDN PVSDMLIDKF GRLHTYLRIS LTERCNLRCQ YCMPSEGVEL
101: TPKPQLLSQS EIVRLAGLFV SAGVNKIRLT GGEPTVRKDI EEICLQLSSL KGLKNLAITT NGITLAKKLP RLKECGLDSL NISLDTLVPA KFEFLTRRKG
201: HDRVMKSIDT AIELGYNPVK VNCVIMRGLN DDEICDFVEL TRDKPINVRF IEFMPFDGNV WNVKKLVPYA EVMDKVVKRF PSIKRMQDHP TETAKNFTID
301: GHCGSVSFIT SMTEHFCAGC NRLRLLADGN FKVCLFGPSE VSLRDPLRSG ADDEALREII GAAVKRKKAA HAGMLDIAKT ANRPMIHIGG

Arabidopsis Description

CNX2CNX2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.