CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH57335

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31955.1	KRH57335	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13856	Soybean	mitochondrion	95.75	95.75
PGSC0003DMT400074537	Potato	cytosol	70.75	81.56
Bra022872.1-P	Field mustard	mitochondrion	72.0	77.21
CDX84751	Canola	mitochondrion	72.0	77.21
CDX79447	Canola	mitochondrion	71.5	76.68
AT2G31955.1	Thale cress	cytosol	72.5	74.36
Solyc01g073730.2.1	Tomato	nucleus	72.75	73.3
KXG30456	Sorghum	mitochondrion	69.25	70.3
Os12t0507000-01	Rice	mitochondrion	70.0	70.18
Os02t0258900-01	Rice	mitochondrion	68.75	69.8
GSMUA_Achr1P19680_001	Banana	mitochondrion	70.5	69.29
Zm00001d016866_P001	Maize	mitochondrion	68.5	67.49
VIT_13s0156g00170.t01	Wine grape	cytosol	77.25	61.8
TraesCS5B01G066700.1	Wheat	mitochondrion	68.0	58.12
TraesCS5A01G059400.1	Wheat	mitochondrion	67.5	57.69
TraesCS5D01G070900.1	Wheat	mitochondrion	67.75	57.29
HORVU5Hr1G014920.3	Barley	mitochondrion	62.0	51.77
CDY42083	Canola	extracellular, mitochondrion	15.5	43.06

Protein Annotations

KEGG:00790+4.1.99.22	EntrezGene:100781968	Gene3D:3.20.20.70	MapMan:7.1.1.1	EMBL:ACUP02004868	InterPro:Aldolase_TIM
InterPro:Elp3/MiaB/NifB	EnsemblPlantsGene:GLYMA_08G157800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0006777	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019008	GO:GO:0019538	GO:GO:0046872	GO:GO:0051536	GO:GO:0051539	UniProt:I1KTQ5
InterPro:IPR013785	EnsemblPlants:KRH43566	ProteinID:KRH43566	ProteinID:KRH43566.1	HAMAP:MF_01225_B	InterPro:Main_SPASM_domain-containing
InterPro:MoaA	InterPro:MoaA_NifB_PqqE_Fe-S-bd_CS	InterPro:Mob_synth_C	PFAM:PF04055	PFAM:PF06463	PFAM:PF13353
ScanProsite:PS01305	PANTHER:PTHR22960	PANTHER:PTHR22960:SF0	SMART:SM00729	InterPro:SPASM/twitch_domain-containing	SUPFAM:SSF102114
TIGRFAMs:TIGR02666	UniParc:UPI0002338275	InterPro:rSAM	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:12226022..12230940

Molecular Weight (calculated)

44810.3 Da

IEP (calculated)

8.431

GRAVY (calculated)

-0.230

Length

400 amino acids

Sequence
(BLAST)

001: MRRYLSKFIH YPIGFNPSNS FPLNCEMGSY CAARSTNRQA SFSGNMHEYA TRAFATTSCA SLSEDQPKDN SVSDMLVDSF GRLHTYLRIS LTERCNLRCQ
101: YCMPADGVEL TPSPQLLTKT EILRCANLFV SSGVNKIRLT GGEPTIRKDI EDICLELSTL KGLKTLSMTT NGIALARKLP KLKECGLNSV NISLDTLVPA
201: KFEFMTRRKG HEKVMDSINA AIDLGFNPVK VNCVVMRGFN DDEICDFVEL TREKPIDIRF IEFMPFDGNV WNVKKLVPYS EMLDTVMKQF TSLKRVQDHP
301: TDTAKNFTID GHAGRISFIT SMTEHFCAGC NRLRLLADGN FKVCLFGPSE ISLRDPLRRG AEDDELREII AAAVKRKKAS HAGMFDIAKT ANRPMIHIGG

Best Arabidopsis Sequence Match ( AT2G31955.1 )
(BLAST)

001: MRRCFSKITD CHLGFKNSNF LLVGSEVGSG SVTRTITTTT SERLFSSSYA AHQVDQIKDN PVSDMLIDKF GRLHTYLRIS LTERCNLRCQ YCMPSEGVEL
101: TPKPQLLSQS EIVRLAGLFV SAGVNKIRLT GGEPTVRKDI EEICLQLSSL KGLKNLAITT NGITLAKKLP RLKECGLDSL NISLDTLVPA KFEFLTRRKG
201: HDRVMKSIDT AIELGYNPVK VNCVIMRGLN DDEICDFVEL TRDKPINVRF IEFMPFDGNV WNVKKLVPYA EVMDKVVKRF PSIKRMQDHP TETAKNFTID
301: GHCGSVSFIT SMTEHFCAGC NRLRLLADGN FKVCLFGPSE VSLRDPLRSG ADDEALREII GAAVKRKKAA HAGMLDIAKT ANRPMIHIGG

Arabidopsis Description

CNX2CNX2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.