Factsheet for TraesCS5D01G070900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G399000.1
TraesCS2B01G417000.1
TraesCS2D01G396500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31955.1	TraesCS2A01G399000.1	AT1G12520.1	21798944
AT2G31955.1	TraesCS2B01G417000.1	AT1G12520.1	21798944
AT2G31955.1	TraesCS2D01G396500.1	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G059400.1	Wheat	mitochondrion	95.56	96.58
TraesCS5B01G066700.1	Wheat	mitochondrion	94.71	95.73
HORVU5Hr1G014920.3	Barley	mitochondrion	87.53	86.43
KXG30456	Sorghum	mitochondrion	67.86	81.47
Os12t0507000-01	Rice	mitochondrion	67.65	80.2
Os02t0258900-01	Rice	mitochondrion	66.6	79.95
Zm00001d016866_P001	Maize	mitochondrion	67.23	78.33
PGSC0003DMT400074537	Potato	cytosol	56.66	77.23
CDX84751	Canola	mitochondrion	56.45	71.58
Bra022872.1-P	Field mustard	mitochondrion	56.45	71.58
GSMUA_Achr1P19680_001	Banana	mitochondrion	61.52	71.5
CDX79447	Canola	mitochondrion	56.03	71.05
AT2G31955.1	Thale cress	cytosol	57.51	69.74
Solyc01g073730.2.1	Tomato	nucleus	57.51	68.51
KRH13856	Soybean	mitochondrion	57.51	68.0
KRH43566	Soybean	cytosol, mitochondrion, plastid	57.29	67.75
VIT_13s0156g00170.t01	Wine grape	cytosol	59.83	56.6
CDY42083	Canola	extracellular, mitochondrion	11.84	38.89

Protein Annotations

KEGG:00790+4.1.99.22	Gene3D:3.20.20.70	MapMan:7.1.1.1	InterPro:Aldolase_TIM	InterPro:Elp3/MiaB/NifB	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006777	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019008	GO:GO:0019538	GO:GO:0046872
GO:GO:0051536	GO:GO:0051539	InterPro:IPR013785	HAMAP:MF_01225_B	InterPro:Main_SPASM_domain-containing	InterPro:MoaA
InterPro:MoaA_NifB_PqqE_Fe-S-bd_CS	InterPro:Mob_synth_C	PFAM:PF04055	PFAM:PF06463	PFAM:PF13353	ScanProsite:PS01305
PANTHER:PTHR22960	PANTHER:PTHR22960:SF0	SMART:SM00729	InterPro:SPASM/twitch_domain-containing	SUPFAM:SSF102114	TIGRFAMs:TIGR02666
EnsemblPlantsGene:TraesCS5D01G070900	EnsemblPlants:TraesCS5D01G070900.1	TIGR:cd01335	InterPro:rSAM	SEG:seg	:

Description

No Description!

Coordinates

chr5D:-:68901808..68905217

Molecular Weight (calculated)

52086.3 Da

IEP (calculated)

9.145

GRAVY (calculated)

-0.242

Length

473 amino acids

Sequence
(BLAST)

001: MQPAASHVTS TLRRRLLSAS RRPPCLAPPT SPPVSRLPVS CGAVTEERGP WSSPATTSSC SPTAPPPAAA PAPRPLSAPV AGKWPHHQLH RLNVPDHQVD
101: PMRVGLRSLT SNSAPTRVNY GHRCSNAYST CCATKPEVQP VETPSSDMLV DSFGRFHNYL RISLTERCNL RCQYCMPAEG VELTPKAELL SHDEIIRIAN
201: LFVTSGVDKI RLTGGEPTVR KDLEDICLHL SGLKGLKTIA MTTNGIVLSK KLPRLKECGL SALNISLDTL IPAKFEFMTR RKGHSKVMES IDTAIQLGYD
301: PVKINCVIMR GMNDDEICDF VELTRHKPIN VRFIEFMPFD GNVWNVKKLV PYAEILDKVR QHFKGVERLQ DHPSDTAKNF KIDGHVGTIS FITSMTEHFC
401: AGCNRLRLLA DGNFKVCLFG PSEVSLREPI HSGLDDAGLK EIISAAVKRK KAKHAGMFDI AKTANRPMIH IGG

Best Arabidopsis Sequence Match ( AT2G31955.1 )
(BLAST)

001: MRRCFSKITD CHLGFKNSNF LLVGSEVGSG SVTRTITTTT SERLFSSSYA AHQVDQIKDN PVSDMLIDKF GRLHTYLRIS LTERCNLRCQ YCMPSEGVEL
101: TPKPQLLSQS EIVRLAGLFV SAGVNKIRLT GGEPTVRKDI EEICLQLSSL KGLKNLAITT NGITLAKKLP RLKECGLDSL NISLDTLVPA KFEFLTRRKG
201: HDRVMKSIDT AIELGYNPVK VNCVIMRGLN DDEICDFVEL TRDKPINVRF IEFMPFDGNV WNVKKLVPYA EVMDKVVKRF PSIKRMQDHP TETAKNFTID
301: GHCGSVSFIT SMTEHFCAGC NRLRLLADGN FKVCLFGPSE VSLRDPLRSG ADDEALREII GAAVKRKKAA HAGMLDIAKT ANRPMIHIGG

Arabidopsis Description

CNX2CNX2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.