CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH57335

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31955.1	KRH57335	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43566	Soybean	cytosol, mitochondrion, plastid	95.75	95.75
PGSC0003DMT400074537	Potato	cytosol	71.0	81.84
Bra022872.1-P	Field mustard	mitochondrion	72.5	77.75
CDX84751	Canola	mitochondrion	72.5	77.75
CDX79447	Canola	mitochondrion	72.0	77.21
AT2G31955.1	Thale cress	cytosol	73.0	74.87
Solyc01g073730.2.1	Tomato	nucleus	72.5	73.05
KXG30456	Sorghum	mitochondrion	69.5	70.56
GSMUA_Achr1P19680_001	Banana	mitochondrion	71.75	70.52
Os02t0258900-01	Rice	mitochondrion	69.0	70.05
Os12t0507000-01	Rice	mitochondrion	69.75	69.92
Zm00001d016866_P001	Maize	mitochondrion	68.75	67.73
VIT_13s0156g00170.t01	Wine grape	cytosol	77.0	61.6
TraesCS5B01G066700.1	Wheat	mitochondrion	68.0	58.12
TraesCS5A01G059400.1	Wheat	mitochondrion	67.75	57.91
TraesCS5D01G070900.1	Wheat	mitochondrion	68.0	57.51
HORVU5Hr1G014920.3	Barley	mitochondrion	62.5	52.19
CDY42083	Canola	extracellular, mitochondrion	15.25	42.36

Protein Annotations

KEGG:00790+4.1.99.22	EntrezGene:100776612	Gene3D:3.20.20.70	MapMan:7.1.1.1	UniProt:A0A0R0G6E6	EMBL:ACUP02009793
InterPro:Aldolase_TIM	InterPro:Elp3/MiaB/NifB	EnsemblPlantsGene:GLYMA_15G268400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005623	GO:GO:0006777	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019008	GO:GO:0019538	GO:GO:0046872	GO:GO:0051536	GO:GO:0051539
InterPro:IPR013785	EnsemblPlants:KRH13856	ProteinID:KRH13856	ProteinID:KRH13856.1	HAMAP:MF_01225_B	InterPro:Main_SPASM_domain-containing
InterPro:MoaA	InterPro:MoaA_NifB_PqqE_Fe-S-bd_CS	InterPro:Mob_synth_C	PFAM:PF04055	PFAM:PF06463	PFAM:PF13353
ScanProsite:PS01305	PANTHER:PTHR22960	PANTHER:PTHR22960:SF0	SMART:SM00729	InterPro:SPASM/twitch_domain-containing	SUPFAM:SSF102114
TIGRFAMs:TIGR02666	UniParc:UPI0003DEB6F1	InterPro:rSAM	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:50487180..50491112

Molecular Weight (calculated)

44779.3 Da

IEP (calculated)

8.643

GRAVY (calculated)

-0.287

Length

400 amino acids

Sequence
(BLAST)

001: MRRYLSKLIH GPVGFNPSNS FPQLNCEMGS YCAARRTNRQ ASFSGNNEYA TRAFATTSCA SLSEDQPKDN PVSDMLVDSF GRLHTYLRIS LTERCNLRCQ
101: YCMPADGVEL TPSPQLLTKT EILRCANLFV SSGVNKIRLT GGEPTIRKDI EDICLELSNL KGLKTLSMTT NGIALARKLP KLKECGLNSV NISLDTLVPA
201: KFEFMTRRKG HEKVMDAINA SIDLGFNPVK VNCVVMRGFN DDEICDFVEL TREKPIDIRF IEFMPFDGNV WNVKKLVPYS EMLDKVMKRF TSLKRVQDHP
301: TDTAKNFTID GHEGRVSFIT SMTEHFCAGC NRLRLLADGN FKVCLFGPSE ISLRDPLRRG AEDDELKEII GAAVKRKKAS HAGMFDIAKT ANRPMIHIGG

Best Arabidopsis Sequence Match ( AT2G31955.1 )
(BLAST)

001: MRRCFSKITD CHLGFKNSNF LLVGSEVGSG SVTRTITTTT SERLFSSSYA AHQVDQIKDN PVSDMLIDKF GRLHTYLRIS LTERCNLRCQ YCMPSEGVEL
101: TPKPQLLSQS EIVRLAGLFV SAGVNKIRLT GGEPTVRKDI EEICLQLSSL KGLKNLAITT NGITLAKKLP RLKECGLDSL NISLDTLVPA KFEFLTRRKG
201: HDRVMKSIDT AIELGYNPVK VNCVIMRGLN DDEICDFVEL TRDKPINVRF IEFMPFDGNV WNVKKLVPYA EVMDKVVKRF PSIKRMQDHP TETAKNFTID
301: GHCGSVSFIT SMTEHFCAGC NRLRLLADGN FKVCLFGPSE VSLRDPLRSG ADDEALREII GAAVKRKKAA HAGMLDIAKT ANRPMIHIGG

Arabidopsis Description

CNX2CNX2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.