Factsheet for Solyc06g011290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073730.2.1
Solyc02g082060.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT3G53180.1	Solyc01g073730.2.1	AT2G31955.1	21798944
AT3G53180.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	11.28	66.67
Solyc01g056390.1.1	Tomato	cytosol, nucleus	18.21	65.14
GSMUA_AchrUn_...	Banana	cytosol	37.18	45.31
Solyc01g056430.1.1	Tomato	cytosol	37.95	44.85
KRH75546	Soybean	plastid	22.31	37.83
Solyc10g083840.1.1	Tomato	cytosol	15.13	36.65
KRH32567	Soybean	endoplasmic reticulum	38.72	35.03
Solyc10g083850.1.1	Tomato	cytosol	47.95	22.45
KRH32570	Soybean	cytosol, nucleus	46.41	21.65
VIT_08s0007g04670.t01	Wine grape	cytosol	44.36	20.6
CDX73575	Canola	cytosol	42.82	20.37
Bra028548.1-P	Field mustard	cytosol	41.79	19.95
Bra006975.1-P	Field mustard	cytosol	42.82	19.72
CDX78151	Canola	cytosol	42.82	19.72
AT3G53180.1	Thale cress	cytosol	42.82	19.6
CDY13313	Canola	cytosol	41.03	19.56
CDX67559	Canola	cytosol	41.54	19.47
HORVU1Hr1G038060.9	Barley	cytosol	40.77	18.84
EER91525	Sorghum	cytosol	40.0	18.53
Zm00001d032815_P011	Maize	cytosol	40.0	18.53
TraesCS1B01G158600.1	Wheat	cytosol	39.74	18.41
TraesCS1D01G141800.1	Wheat	golgi	39.49	18.29
TraesCS1A01G143000.1	Wheat	cytosol	39.23	18.19
Os10t0456500-02	Rice	plasma membrane	39.23	18.11
TraesCS6D01G065600.1	Wheat	cytosol	35.13	16.81
HORVU6Hr1G012290.5	Barley	cytosol	35.64	16.49
Solyc10g083830.1.1	Tomato	extracellular	23.33	14.85
GSMUA_AchrUn_...	Banana	cytosol	3.33	2.51
Solyc10g083550.1.1	Tomato	cytosol	1.79	1.75
Solyc06g011330.1.1	Tomato	cytosol	1.03	1.34
Zm00001d047936_P001	Maize	cytosol	0.0	0.0
Zm00001d044569_P001	Maize	cytosol	0.0	0.0
Zm00001d033947_P001	Maize	cytosol	0.0	0.0
Zm00001d031055_P001	Maize	cytosol	0.0	0.0
Zm00001d021367_P001	Maize	cytosol	0.0	0.0
Solyc01g056450.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc06g011290.1.1	EnsemblPlantsGene:Solyc06g011290.1	Gene3D:3.20.20.140	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
InterPro:Amidohydro-rel	InterPro:Metal_Hydrolase	PANTHER:PTHR20852	PANTHER:PTHR20852:SF65	PFAM:PF04909	SEG:seg
SUPFAM:SSF51556	UniParc:UPI0002767269	UniProt:K4C456	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6:+:6465700..6468638

Molecular Weight (calculated)

44163.8 Da

IEP (calculated)

7.161

GRAVY (calculated)

-0.020

Length

390 amino acids

Sequence
(BLAST)

001: MDDESISLNF GILNGKFCMS NQQLLIDSGI FHTSKAKSTC KIHWSNSFSA KLCSQSVGSI IFLFSWQRGL RELTELYGPS LSLSLGSHTI QETRRSLGLE
101: QSAITCFRAA KICTVLIDDG IELDKMVDIE WHKKVVPMVG RILRVEHLAE KILDKHMGEC NWKKEFNGRL LDKHDFDKVL EEKYNREIMQ SAEAKPLYIS
201: TTFLVMANKV VAFKSMVACR SGLAINTEVT KKEAEEGLND VLRAGNPLRI SNKSFIDYIF MHALEVAQSY DLPMQIHMGF GDKDFDMMLA NPLYLHNLLE
301: DKRFNDSRLV LLHASYPFSK EASHLASAYP QVYLDFGFAI PKLSFHGMIS SVKELLKLAP MNKVMFSTDA IAFAEAFYLG LAKLELILYP

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.