Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g073730.2.1 | |
| Solyc02g082060.1.1 | |
| Solyc05g007200.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53180.1 | Solyc05g007200.2.1 | AT1G14340.1 | 21798944 |
| AT3G53180.1 | Solyc01g073730.2.1 | AT2G31955.1 | 21798944 |
| AT3G53180.1 | Solyc02g082060.1.1 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g083840.1.1 | Tomato | cytosol | 49.54 | 33.54 |
| Solyc01g056430.1.1 | Tomato | cytosol | 87.16 | 28.79 |
| Solyc06g011290.1.1 | Tomato | cytosol | 65.14 | 18.21 |
| GSMUA_AchrUn_... | Banana | cytosol | 45.87 | 15.62 |
| Solyc10g083850.1.1 | Tomato | cytosol | 69.72 | 9.12 |
| Bra028548.1-P | Field mustard | cytosol | 50.46 | 6.73 |
| AT3G53180.1 | Thale cress | cytosol | 52.29 | 6.69 |
| CDX73575 | Canola | cytosol | 49.54 | 6.59 |
| CDY13313 | Canola | cytosol | 48.62 | 6.48 |
| CDX67559 | Canola | cytosol | 48.62 | 6.37 |
| Bra006975.1-P | Field mustard | cytosol | 48.62 | 6.26 |
| CDX78151 | Canola | cytosol | 48.62 | 6.26 |
| Os10t0456500-02 | Rice | plasma membrane | 46.79 | 6.04 |
| TraesCS6D01G065600.1 | Wheat | cytosol | 44.04 | 5.89 |
| TraesCS1B01G158600.1 | Wheat | cytosol | 44.95 | 5.82 |
| HORVU1Hr1G038060.9 | Barley | cytosol | 44.95 | 5.81 |
| TraesCS1A01G143000.1 | Wheat | cytosol | 44.04 | 5.71 |
| EER91525 | Sorghum | cytosol | 43.12 | 5.58 |
| Zm00001d032815_P011 | Maize | cytosol | 42.2 | 5.46 |
| TraesCS1D01G141800.1 | Wheat | golgi | 41.28 | 5.34 |
| HORVU6Hr1G012290.5 | Barley | cytosol | 41.28 | 5.34 |
| Zm00001d021367_P001 | Maize | cytosol | 1.83 | 0.97 |
| Solyc06g011330.1.1 | Tomato | cytosol | 1.83 | 0.67 |
| Solyc10g083830.1.1 | Tomato | extracellular | 3.67 | 0.65 |
| Solyc10g083550.1.1 | Tomato | cytosol | 0.92 | 0.25 |
| Solyc01g056400.1.1 | Tomato | endoplasmic reticulum, extracellular | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
| Solyc01g056450.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Zm00001d031055_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d033947_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d044569_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d047936_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc01g056390.1.1 | EnsemblPlantsGene:Solyc01g056390.1 | Gene3D:3.20.20.140 | PANTHER:PTHR20852 | PANTHER:PTHR20852:SF65 | SEG:seg |
| UniParc:UPI0002763555 | UniProt:K4AVK7 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1:+:54088870..54090437
Molecular Weight (calculated)
12264.0 Da
IEP (calculated)
6.943
GRAVY (calculated)
-0.017
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGSSLSLDA VEESRRCLGL EASAAVSFKA ARIVILLIDD GIKLDKKLDI KCHEKVVPTV GRILQVEHVA HNILEKPDRI SNKNFSDYIF MHALEVAQNF
101: NLPMQIDTR
101: NLPMQIDTR
001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY
Arabidopsis Description
Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.