Factsheet for PGSC0003DMT400068658

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

cytosol 3
endoplasmic reticulum 6
extracellular 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	endoplasmic reticulum
MultiLoc:	extracellular
Plant-mPloc:	cytosol, endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000833
PGSC0003DMT400006409
PGSC0003DMT400015077
PGSC0003DMT400018924
PGSC0003DMT400022726
PGSC0003DMT400023896
PGSC0003DMT400028790
PGSC0003DMT400034320
PGSC0003DMT400038377
PGSC0003DMT400041063
PGSC0003DMT400041172
PGSC0003DMT400050482
PGSC0003DMT400061546
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09180.1	PGSC0003DMT400061546	AT2G40380.1	21798944
AT1G09180.1	PGSC0003DMT400018924	AT4G25660.1	21798944
AT1G09180.1	PGSC0003DMT400018924	AT4G25680.1	21798944
AT1G09180.1	PGSC0003DMT400034320	AT5G01640.1	21798944
AT1G09180.1	PGSC0003DMT400041063	AT5G01640.1	21798944
AT1G09180.1	PGSC0003DMT400022726	AT5G02040.1	21798944
AT1G09180.1	PGSC0003DMT400028790	AT5G02040.1	21798944
AT1G56330.1	PGSC0003DMT400000833	AT2G20130.1	21798944
AT1G56330.1	PGSC0003DMT400006409	AT3G13710.1	21798944
AT1G56330.1	PGSC0003DMT400006409	AT3G13720.1	21798944
AT1G56330.1	PGSC0003DMT400041172	AT3G43230.1	21798944
AT1G56330.1	PGSC0003DMT400038377	AT4G17720.1	21798944
AT1G56330.1	PGSC0003DMT400034320	AT5G01640.1	21798944
AT1G56330.1	PGSC0003DMT400041063	AT5G01640.1	21798944
AT1G56330.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G56330.1	PGSC0003DMT400050482	AT5G22290.1	21798944
AT4G02080.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT4G02080.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT4G02080.1	PGSC0003DMT400023896	AT1G71230.1	21798944
AT4G02080.1	PGSC0003DMT400069203	AT1G71230.1	21798944
AT4G02080.1	PGSC0003DMT400061546	AT2G40380.1	21798944
AT4G02080.1	PGSC0003DMT400006409	AT3G13720.1	21798944
AT4G02080.1	PGSC0003DMT400018924	AT4G25680.1	21798944
AT4G02080.1	PGSC0003DMT400034320	AT5G01640.1	21798944
AT4G02080.1	PGSC0003DMT400041063	AT5G01640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g060130.2.1	Tomato	endoplasmic reticulum, extracellular	99.48	99.48
AT3G62560.1	Thale cress	endoplasmic reticulum	91.19	91.19
PGSC0003DMT400023327	Potato	endoplasmic reticulum, extracellular	90.67	90.67
PGSC0003DMT400007183	Potato	endoplasmic reticulum, golgi	90.67	90.67
PGSC0003DMT400018800	Potato	cytosol	89.64	89.64
HORVU3Hr1G035000.2	Barley	plasma membrane	89.12	89.12
TraesCS5A01G089200.1	Wheat	golgi	89.12	89.12
EES02699	Sorghum	endoplasmic reticulum, extracellular	89.12	89.12
TraesCS3B01G203800.1	Wheat	endoplasmic reticulum	89.12	89.12
Zm00001d040278_P001	Maize	extracellular	89.12	89.12
TraesCS3A01G172900.1	Wheat	golgi	89.12	89.12
CDX90955	Canola	endoplasmic reticulum, extracellular	88.6	88.6
TraesCS5D01G101300.1	Wheat	golgi	88.6	88.6
CDY22027	Canola	endoplasmic reticulum, extracellular	88.6	88.6
Bra000895.1-P	Field mustard	endoplasmic reticulum, extracellular	88.6	88.6
Os01t0254000-01	Rice	plasma membrane	88.6	88.6
KRH33832	Soybean	endoplasmic reticulum	88.6	88.6
AT4G02080.1	Thale cress	endoplasmic reticulum	88.6	88.6
KRG92955	Soybean	endoplasmic reticulum, extracellular	88.6	88.6
CDX91807	Canola	endoplasmic reticulum, extracellular	88.08	88.08
TraesCS5B01G095200.1	Wheat	endoplasmic reticulum, extracellular	88.08	88.08
EES00709	Sorghum	endoplasmic reticulum, extracellular	87.56	87.56
TraesCS3A01G193800.1	Wheat	golgi	87.56	87.56
KRG96730	Soybean	endoplasmic reticulum	87.56	87.56
KRH68446	Soybean	endoplasmic reticulum	87.56	87.56
TraesCS3B01G221700.1	Wheat	endoplasmic reticulum, extracellular	87.56	87.56
Os12t0560300-01	Rice	plasma membrane	87.56	87.56
Zm00001d040752_P001	Maize	endoplasmic reticulum, extracellular	87.56	87.56
CDY65544	Canola	endoplasmic reticulum, extracellular	86.53	87.43
TraesCS3D01G196200.1	Wheat	endoplasmic reticulum, extracellular	87.05	87.05
KXG23692	Sorghum	endoplasmic reticulum, extracellular	87.05	87.05
Os01t0338000-01	Rice	plasma membrane	86.53	86.53
AT1G56330.1	Thale cress	endoplasmic reticulum	86.53	86.53
CDY41713	Canola	endoplasmic reticulum, extracellular	87.05	86.15
CDY59269	Canola	endoplasmic reticulum, extracellular	87.05	86.15
Bra027937.1-P	Field mustard	endoplasmic reticulum, extracellular	87.05	86.15
CDY32159	Canola	endoplasmic reticulum, golgi	86.01	86.01
CDY31105	Canola	endoplasmic reticulum, golgi	86.01	86.01
CDX95000	Canola	endoplasmic reticulum, golgi	86.01	86.01
CDX93520	Canola	endoplasmic reticulum, golgi	86.01	86.01
Bra018576.1-P	Field mustard	endoplasmic reticulum, golgi	86.01	86.01
CDY39001	Canola	endoplasmic reticulum, extracellular	86.53	85.64
Bra038169.1-P	Field mustard	endoplasmic reticulum, extracellular	86.53	85.64
TraesCS3D01G179300.1	Wheat	endoplasmic reticulum, extracellular	89.12	85.57
AT1G09180.1	Thale cress	extracellular	84.46	84.46
VIT_16s0013g00170.t01	Wine grape	cytosol	45.08	80.56
EES15193	Sorghum	endoplasmic reticulum	79.79	78.97
Os06t0225000-00	Rice	endoplasmic reticulum	79.27	78.87
KXG28257	Sorghum	endoplasmic reticulum	79.27	78.87
TraesCS7B01G236300.1	Wheat	cytosol	78.76	78.76
Zm00001d049068_P001	Maize	cytosol	78.76	78.35
TraesCS7D01G332100.1	Wheat	endoplasmic reticulum	78.24	78.24
HORVU7Hr1G080190.1	Barley	endoplasmic reticulum	77.72	77.72
AT1G02620.1	Thale cress	endoplasmic reticulum	47.15	74.59
VIT_14s0060g01340.t01	Wine grape	endoplasmic reticulum, extracellular	79.79	64.98
HORVU3Hr1G045150.3	Barley	plastid	72.02	62.33
Zm00001d009211_P001	Maize	mitochondrion	87.56	51.68
Bra036294.1-P	Field mustard	endoplasmic reticulum	88.08	41.67
CDY07095	Canola	endoplasmic reticulum	88.08	41.56
PGSC0003DMT400040524	Potato	cytosol, plastid	29.02	33.94
PGSC0003DMT400008577	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.09	32.61
PGSC0003DMT400023482	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.57	32.07
PGSC0003DMT400055238	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.05	31.52
GSMUA_Achr11P...	Banana	mitochondrion, plastid	34.72	27.57

Protein Annotations

EntrezGene:102595918	EntrezGene:102602861	MapMan:22.4.2.1	Gene3D:3.40.50.300	ProteinID:ABB16973	ProteinID:ABB16973.1
ProteinID:ABB29944	ProteinID:ABB29944.1	EMBL:DQ228324	EMBL:DQ235187	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031
GO:GO:0016192	InterPro:IPR006687	RefSeq:NP_001275076.1	InterPro:P-loop_NTPase	PFAM:PF00025	EnsemblPlantsGene:PGSC0003DMG400026695
PGSC:PGSC0003DMG400026695	EnsemblPlants:PGSC0003DMT400068658	PRINTS:PR00328	PFscan:PS51422	PANTHER:PTHR11711	PANTHER:PTHR11711:SF203
UniProt:Q307Y7	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF/SAR
InterPro:Small_GTPase_SAR1	TIGRFAMs:TIGR00231	UniParc:UPI00005DB2C3	RefSeq:XP_006355838.1	:	:

Description

GTPase [Source:PGSC_GENE;Acc:PGSC0003DMG400026695]

Coordinates

chr1:-:44699969..44702597

Molecular Weight (calculated)

21910.5 Da

IEP (calculated)

6.959

GRAVY (calculated)

-0.163

Length

193 amino acids

Sequence
(BLAST)

001: MFLVDWFYGV LASLGLWQKD AKILFLGLDN AGKTTLLHML KDERLVQHQP TQYPTSEELS IGNIKFKAFD LGGHQIARRV WRDYYAKVDA VVYLVDANDR
101: ERFPEAKKEL DGLLSDESLT NVPFLILGNK IDIPYAASED ELRYHLGLTG VTTGKGNVNL AGTNVRPIEV FMCSIVRKMG YGEGFKWMSQ YIK

Best Arabidopsis Sequence Match ( AT3G62560.1 )
(BLAST)

001: MFLVDWFYGV LATLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA NVPFLILGNK IDIPYAASED ELRYHLGLTS FTTGKGKVNL AGTNVRPLEV FMCSIVRKMG YGEGFKWVSQ YID

Arabidopsis Description

Putative Sar1 GTP binding protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.