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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • cytosol 3
  • endoplasmic reticulum 6
  • extracellular 4
  • vacuole 3
  • plasma membrane 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, secretory
BaCelLo:cytosol
EpiLoc:endoplasmic reticulum
MultiLoc:extracellular
Plant-mPloc:cytosol, endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX78795
CDX80758
CDX88803
CDX90453
CDX90455
CDX92368
CDX97509
CDY01473
CDY01476
CDY01477
CDY05723
CDY09128
CDY17034
CDY23634
CDY23649
CDY30955
CDY31990
CDY35676
CDY37482
CDY37483
CDY44837
CDY47592
CDY51733
CDY51734
CDY51735
CDY55133
CDY60787
CDY67628

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G56330.1 CDY17034 AT1G47260.1 21798944
AT1G56330.1 CDY23649 AT1G47260.1 21798944
AT1G56330.1 CDY47592 AT1G47260.1 21798944
AT1G56330.1 CDY67628 AT1G47260.1 21798944
AT1G56330.1 CDY05723 AT2G20130.1 21798944
AT1G56330.1 CDY31990 AT2G20130.1 21798944
AT1G56330.1 CDX97509 AT3G13710.1 21798944
AT1G56330.1 CDY23634 AT3G13710.1 21798944
AT1G56330.1 CDY37483 AT3G13710.1 21798944
AT1G56330.1 CDY51735 AT3G13710.1 21798944
AT1G56330.1 CDY37482 AT3G13720.1 21798944
AT1G56330.1 CDY51733 AT3G13720.1 21798944
AT1G56330.1 CDY51734 AT3G13720.1 21798944
AT1G56330.1 CDY55133 AT3G13720.1 21798944
AT1G56330.1 CDY30955 AT3G43230.1 21798944
AT1G56330.1 CDY44837 AT3G43230.1 21798944
AT1G56330.1 CDX78795 AT4G17720.1 21798944
AT1G56330.1 CDX90453 AT4G17720.1 21798944
AT1G56330.1 CDX90455 AT4G17720.1 21798944
AT1G56330.1 CDY01473 AT4G17720.1 21798944
AT1G56330.1 CDY01476 AT4G17720.1 21798944
AT1G56330.1 CDY01477 AT4G17720.1 21798944
AT1G56330.1 CDY60787 AT4G17720.1 21798944
AT1G56330.1 CDX80758 AT5G01640.1 21798944
AT1G56330.1 CDX70995 AT5G22290.1 21798944
AT1G56330.1 CDX88803 AT5G22290.1 21798944
AT1G56330.1 CDX92368 AT5G22290.1 21798944
AT1G56330.1 CDY09128 AT5G22290.1 21798944
AT1G56330.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra038169.1-P Field mustard endoplasmic reticulum, extracellular 100.0 100.0
CDY65544 Canola endoplasmic reticulum, extracellular 97.95 100.0
CDY59269 Canola endoplasmic reticulum, extracellular 99.49 99.49
CDY41713 Canola endoplasmic reticulum, extracellular 99.49 99.49
AT1G56330.1 Thale cress endoplasmic reticulum 97.44 98.45
CDY31105 Canola endoplasmic reticulum, golgi 93.33 94.3
CDX93520 Canola endoplasmic reticulum, golgi 93.33 94.3
CDX95000 Canola endoplasmic reticulum, golgi 93.33 94.3
CDY32159 Canola endoplasmic reticulum, golgi 92.82 93.78
CDY22027 Canola endoplasmic reticulum, extracellular 92.82 93.78
CDX90955 Canola endoplasmic reticulum, extracellular 92.82 93.78
CDX91807 Canola endoplasmic reticulum, extracellular 92.31 93.26
PGSC0003DMT400007183 Potato endoplasmic reticulum, golgi 90.77 91.71
TraesCS5A01G089200.1 Wheat golgi 90.77 91.71
KRG92955 Soybean endoplasmic reticulum, extracellular 90.77 91.71
Solyc01g100350.2.1 Tomato plastid 90.77 91.71
KRH33832 Soybean endoplasmic reticulum 90.26 91.19
EES00709 Sorghum endoplasmic reticulum, extracellular 90.26 91.19
Zm00001d040752_P001 Maize endoplasmic reticulum, extracellular 90.26 91.19
KRG96730 Soybean endoplasmic reticulum 90.26 91.19
TraesCS3A01G193800.1 Wheat golgi 90.26 91.19
TraesCS3B01G221700.1 Wheat endoplasmic reticulum, extracellular 90.26 91.19
TraesCS5D01G101300.1 Wheat golgi 90.26 91.19
KRH68446 Soybean endoplasmic reticulum 89.74 90.67
KXG23692 Sorghum endoplasmic reticulum, extracellular 89.74 90.67
Os01t0338000-01 Rice plasma membrane 89.74 90.67
TraesCS3D01G196200.1 Wheat endoplasmic reticulum, extracellular 89.74 90.67
Os12t0560300-01 Rice plasma membrane 89.74 90.67
TraesCS5B01G095200.1 Wheat endoplasmic reticulum, extracellular 89.74 90.67
Os01t0254000-01 Rice plasma membrane 88.72 89.64
EES02699 Sorghum endoplasmic reticulum, extracellular 87.69 88.6
Zm00001d040278_P001 Maize extracellular 87.69 88.6
HORVU3Hr1G035000.2 Barley plasma membrane 86.67 87.56
TraesCS3A01G172900.1 Wheat golgi 86.67 87.56
TraesCS3B01G203800.1 Wheat endoplasmic reticulum 86.67 87.56
VIT_16s0013g00170.t01 Wine grape cytosol 48.21 87.04
PGSC0003DMT400068658 Potato endoplasmic reticulum, extracellular 85.64 86.53
Solyc01g060130.2.1 Tomato endoplasmic reticulum, extracellular 85.13 86.01
TraesCS3D01G179300.1 Wheat endoplasmic reticulum, extracellular 86.67 84.08
Zm00001d049068_P001 Maize cytosol 78.97 79.38
EES15193 Sorghum endoplasmic reticulum 78.97 78.97
KXG28257 Sorghum endoplasmic reticulum 78.46 78.87
TraesCS7B01G236300.1 Wheat cytosol 77.44 78.24
HORVU7Hr1G080190.1 Barley endoplasmic reticulum 76.92 77.72
TraesCS7D01G332100.1 Wheat endoplasmic reticulum 76.92 77.72
Os06t0225000-00 Rice endoplasmic reticulum 76.41 76.8
VIT_14s0060g01340.t01 Wine grape endoplasmic reticulum, extracellular 81.54 67.09
HORVU3Hr1G045150.3 Barley plastid 74.36 65.02
Zm00001d009211_P001 Maize mitochondrion 90.26 53.82
CDY07095 Canola endoplasmic reticulum 93.33 44.5
CDY08727 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 31.79 33.7
CDY36501 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 31.79 33.7
CDY18665 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 30.77 32.61
CDY23031 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 30.77 32.61
CDY02106 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 30.77 32.61
CDX81307 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 30.77 32.61
CDY43583 Canola cytosol 12.31 31.58
CDY06369 Canola cytosol 28.21 30.22
GSMUA_Achr11P... Banana mitochondrion, plastid 34.87 27.98
CDY37846 Canola cytosol, mitochondrion, nucleus, plastid 16.92 25.78
CDX68554 Canola cytosol 16.92 25.58
CDY01716 Canola cytosol 28.21 24.44
CDY01715 Canola cytosol 28.21 24.44
CDX74569 Canola cytosol 28.21 24.34
CDY22028 Canola nucleus 17.44 16.59
Protein Annotations
MapMan:22.4.2.1Gene3D:3.40.50.300GO:A0A078HN32UniProt:A0A078HN32EnsemblPlants:CDY39001ProteinID:CDY39001
ProteinID:CDY39001.1GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005525GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005794GO:GO:0006810
GO:GO:0006886GO:GO:0008150GO:GO:0015031GO:GO:0016192EnsemblPlantsGene:GSBRNA2T00067086001InterPro:IPR006687
InterPro:P-loop_NTPasePFAM:PF00025PRINTS:PR00328PFscan:PS51422PANTHER:PTHR11711PANTHER:PTHR11711:SF165
SMART:SM00177SMART:SM00178SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase_ARF/SARInterPro:Small_GTPase_SAR1
TIGRFAMs:TIGR00231UniParc:UPI000253E51CSEG:seg:::
Description
BnaC01g27280DBnaC01g27280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HN32]
Coordinates
chrLK032437:+:135619..136786
Molecular Weight (calculated)
22119.7 Da
IEP (calculated)
7.073
GRAVY (calculated)
-0.152
Length
195 amino acids
Sequence
(BLAST)
001: MFLFDWFYGI LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFSESKREL DALLSDEALA TVPFLILGNK IDIPYAASED ELRYHLGLTN FTTGKGKVTT AGGDSGVRPL EVFMCSIVRK MGYGEGFKWL SQYIN
Best Arabidopsis Sequence Match ( AT1G56330.1 )
(BLAST)
001: MFLFDWFYGI LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKREL DALLSDEALA TVPFLILGNK IDIPYAASED ELRYHLGLTN FTTGKGKVTL GDSGVRPLEV FMCSIVRKMG YGEGFKWLSQ YIN
Arabidopsis Description
SAR1BSAR1B [Source:UniProtKB/TrEMBL;Acc:A0A178WM97]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.