Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60787 | Canola | nucleus | 97.69 | 97.69 |
| Bra040177.1-P | Field mustard | nucleus | 96.7 | 97.02 |
| CDY01476 | Canola | cytosol | 41.91 | 88.81 |
| CDY01477 | Canola | cytosol | 86.8 | 86.8 |
| CDX90453 | Canola | cytosol | 88.12 | 86.41 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 88.78 | 85.94 |
| CDY01473 | Canola | nucleus | 52.81 | 80.81 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 65.02 | 69.86 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 55.12 | 68.44 |
| Solyc08g076530.2.1 | Tomato | plastid | 63.37 | 68.33 |
| KRH39571 | Soybean | nucleus | 63.04 | 68.21 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 62.38 | 67.99 |
| KRH74377 | Soybean | endoplasmic reticulum | 62.38 | 67.74 |
| PGSC0003DMT400038377 | Potato | cytosol | 62.71 | 67.62 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 71.95 | 65.47 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 72.28 | 65.37 |
| CDX90455 | Canola | cytosol | 43.56 | 63.46 |
| EER89059 | Sorghum | cytosol | 53.14 | 59.85 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 51.82 | 59.7 |
| Os06t0112400-01 | Rice | plasma membrane | 51.16 | 59.39 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 51.16 | 58.27 |
| TraesCS7D01G027100.1 | Wheat | plastid | 51.16 | 58.27 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 53.14 | 57.91 |
| CDX70721 | Canola | cytosol | 49.17 | 57.09 |
| CDX78713 | Canola | cytosol | 49.17 | 57.09 |
| CDX69415 | Canola | cytosol | 47.19 | 55.0 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 48.84 | 53.24 |
| Os04t0594400-01 | Rice | plasma membrane | 55.12 | 53.18 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 55.12 | 53.18 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 53.47 | 53.11 |
| EES12769 | Sorghum | cytosol | 54.13 | 52.23 |
| Zm00001d002475_P001 | Maize | extracellular | 54.13 | 52.23 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 53.8 | 51.75 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 53.47 | 51.1 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 53.14 | 50.79 |
| TraesCS7A01G030900.2 | Wheat | plastid | 51.16 | 49.21 |
| Zm00001d026150_P001 | Maize | cytosol | 38.61 | 48.75 |
| Zm00001d031612_P001 | Maize | cytosol | 38.61 | 48.75 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 53.47 | 46.82 |
| Zm00001d054082_P001 | Maize | cytosol | 42.9 | 45.94 |
| CDY16974 | Canola | plastid | 47.85 | 45.6 |
| CDX85485 | Canola | plastid | 46.86 | 45.08 |
| CDY01872 | Canola | cytosol, plastid | 40.92 | 43.66 |
| CDY38176 | Canola | cytosol | 36.63 | 42.21 |
| CDY25131 | Canola | cytosol, mitochondrion, nucleus, plastid | 36.3 | 41.35 |
| Os04t0624800-01 | Rice | nucleus | 50.83 | 40.96 |
| Zm00001d046992_P001 | Maize | cytosol | 43.89 | 40.67 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 50.83 | 40.31 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 42.9 | 40.0 |
| CDX96860 | Canola | nucleus | 31.68 | 39.34 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 51.16 | 39.04 |
| CDY62016 | Canola | nucleus | 30.03 | 38.89 |
| CDY49093 | Canola | cytosol | 31.35 | 38.78 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 50.49 | 38.54 |
| CDX84035 | Canola | nucleus | 31.02 | 38.52 |
| OQU85574 | Sorghum | nucleus | 48.84 | 37.85 |
| Zm00001d051524_P002 | Maize | nucleus | 47.85 | 35.98 |
| CDY60084 | Canola | cytosol, nucleus, plastid | 8.91 | 35.53 |
| CDY38083 | Canola | nucleus | 46.86 | 33.89 |
| Zm00001d014267_P001 | Maize | nucleus | 46.86 | 33.65 |
| Zm00001d046215_P001 | Maize | cytosol | 33.33 | 31.56 |
| CDX74287 | Canola | cytosol | 25.74 | 30.95 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 25.41 | 30.56 |
Protein Annotations
| EnsemblPlants:CDX78795 | EnsemblPlantsGene:GSBRNA2T00131258001 | Gene3D:3.30.70.330 | GO:A0A078CPK9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF5 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX78795 | ProteinID:CDX78795.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE2580 | MapMan:35.1 | : |
Description
BnaA01g08620D
Coordinates
chrLK031816:-:95443..97186
Molecular Weight (calculated)
32429.1 Da
IEP (calculated)
5.741
GRAVY (calculated)
-0.387
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSVKVSNVS LGATERDLKE FFSFSGDILY LEMHSETERS KLAYVTFKDL QGAETAVLLS GATIVDSSVI VTMAPDYQLS PEALSSLEPK EDSSKSPRAS
101: VFRKAEDVVS SMLAKGFILG KDAIAKAKSV DEKHQLTSTA SARVASLDKK IGFTDKINTG TVAVGEKVKE VDHKYQVSEK TKSAIAAAEQ TVSSAGSAIM
201: KNRYVLTGAT WVTGAFSKVA KAAEEVGQMA KEKVGLAEEE DKRKVVDEFA RVHLSESPKA AAASSEGEES KFSESPEAKK DSEHQEHSQV QQAPPPPVAP
301: AQP
101: VFRKAEDVVS SMLAKGFILG KDAIAKAKSV DEKHQLTSTA SARVASLDKK IGFTDKINTG TVAVGEKVKE VDHKYQVSEK TKSAIAAAEQ TVSSAGSAIM
201: KNRYVLTGAT WVTGAFSKVA KAAEEVGQMA KEKVGLAEEE DKRKVVDEFA RVHLSESPKA AAASSEGEES KFSESPEAKK DSEHQEHSQV QQAPPPPVAP
301: AQP
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.