CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 3
plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024988.1-P	Field mustard	vacuole	97.01	97.6
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	93.73	94.29
AT5G46870.1	Thale cress	nucleus	75.22	85.42
CDX90453	Canola	cytosol	66.87	72.49
CDX78795	Canola	nucleus	65.37	72.28
CDY01477	Canola	cytosol	65.37	72.28
CDY60787	Canola	nucleus	64.78	71.62
CDY01476	Canola	cytosol	30.45	71.33
VIT_02s0012g01860.t01	Wine grape	cytosol	55.82	66.31
CDY01473	Canola	nucleus	39.1	66.16
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	48.06	65.98
KRH74377	Soybean	endoplasmic reticulum	54.63	65.59
KRH39571	Soybean	nucleus	54.03	64.64
Solyc08g076530.2.1	Tomato	plastid	54.03	64.41
PGSC0003DMT400038377	Potato	cytosol	53.73	64.06
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	52.24	62.95
CDX90455	Canola	cytosol	36.42	58.65
Os06t0112400-01	Rice	plasma membrane	44.18	56.7
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	44.48	56.02
TraesCS7D01G027100.1	Wheat	plastid	44.48	56.02
HORVU7Hr1G003710.1	Barley	cytosol	43.88	55.89
EER89059	Sorghum	cytosol	44.78	55.76
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	45.07	54.32
CDX70721	Canola	cytosol	42.09	54.02
CDX78713	Canola	cytosol	41.49	53.26
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	49.85	53.18
EES12769	Sorghum	cytosol	48.66	51.91
Zm00001d002475_P001	Maize	extracellular	48.36	51.59
Os04t0594400-01	Rice	plasma membrane	48.36	51.59
CDX69415	Canola	cytosol	40.0	51.54
GSMUA_Achr8P14700_001	Banana	plastid	46.87	51.48
TraesCS2D01G444000.1	Wheat	extracellular	48.36	51.43
TraesCS2B01G466100.1	Wheat	extracellular	48.36	51.1
TraesCS2A01G445100.1	Wheat	extracellular	47.76	50.47
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	40.9	49.28
TraesCS7A01G030900.2	Wheat	plastid	45.07	47.94
Zm00001d026150_P001	Maize	cytosol	33.43	46.67
Zm00001d031612_P001	Maize	cytosol	33.43	46.67
Zm00001d035920_P002	Maize	extracellular, vacuole	45.67	44.22
Zm00001d054082_P001	Maize	cytosol	36.42	43.11
CDX85485	Canola	plastid	40.0	42.54
CDY16974	Canola	plastid	40.0	42.14
CDY38176	Canola	cytosol	32.24	41.06
CDY01872	Canola	cytosol, plastid	34.33	40.49
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	39.1	40.31
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	31.94	40.23
Os04t0624800-01	Rice	nucleus	44.48	39.63
TraesCS6D01G249000.1	Wheat	nucleus, plastid	45.07	39.53
CDY60084	Canola	cytosol, nucleus, plastid	8.96	39.47
Zm00001d046992_P001	Maize	cytosol	37.91	38.84
TraesCS6A01G265600.1	Wheat	extracellular	45.37	38.29
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	44.78	37.78
CDY49093	Canola	cytosol	26.57	36.33
OQU85574	Sorghum	nucleus	42.09	36.06
CDY62016	Canola	nucleus	25.07	35.9
CDX96860	Canola	nucleus	25.97	35.66
CDX84035	Canola	nucleus	25.67	35.25
Zm00001d051524_P002	Maize	nucleus	40.9	33.99
Zm00001d014267_P001	Maize	nucleus	40.9	32.46
CDY38083	Canola	nucleus	40.3	32.22
CDX74287	Canola	cytosol	23.28	30.95
CDX91958	Canola	cytosol, nucleus, plastid	22.99	30.56
Zm00001d046215_P001	Maize	cytosol	27.46	28.75

Protein Annotations

EnsemblPlants:CDX77703	EnsemblPlantsGene:GSBRNA2T00128685001	Gene3D:3.30.70.330	GO:A0A078CRE3	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44136	PANTHER:PTHR44136:SF5	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX77703	ProteinID:CDX77703.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE2818	MapMan:35.1	:

Description

BnaC07g19570D

Coordinates

chrLK031812:+:1068438..1070361

Molecular Weight (calculated)

36463.7 Da

IEP (calculated)

4.927

GRAVY (calculated)

-0.552

Length

335 amino acids

Sequence
(BLAST)

001: MPVSFSYPEF LIRLELMVTV KVSNVSLAVT ERELKEFFSF SGEIVHLEMQ SENEGGSKLA YVTFKDLQGA ETALLLTGAT IVDSSVTVTM SPDYQLPPDA
101: LASIESSKES DKSSSSPPKE DVSVFRKAED VVRNMISKGF ILGKDAIAKA KSLDEKHQLT STASAKVTSF DKRIGFTEKI NTGTTAVSGK VKEVDQKFQV
201: TEKTKSAIAA AEQTVSNAGS SIMKNRYVLT GTTWVAGAFE KVSKAAEEVG QKAKEKVGRA QEDEEKRKEV DEVASVHLSE SPKALDQPEQ DSKLSESPKD
301: LDQPEHDSKL SESQPQQLQP HKQEESTPNV ASGQP

Best Arabidopsis Sequence Match ( AT5G46870.1 )
(BLAST)

001: MSMVTVKVSN VSLEATERDL KEFFSFSGDI AYLETQSEND GSKLAYVTFK DLQGAETAVL LTGSTIVDSS VTVTMSPDYQ LPPDALASIE SLKESNKSSS
101: PTREDVSVFR KAEDVVSGMI SKGFVLGKDA IAKAKSLDEK HQLTSTASAR VTSFDKRIGF TEKINTGTTV VSEKVKEVDQ KFQVTEKTKS AIAAAEQTVS
201: NAGSAIMKNR YVLTGATWVT GAFNRVSKAA EEVGQKAKEK VGLAEEEEEE KKKVVDEVAI VHLTESPKAL DQSEQDSKLP ESKSQPHKEL NASVV

Arabidopsis Description

At5g46870 [Source:UniProtKB/TrEMBL;Acc:Q6NM69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.