CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78713	Canola	cytosol	97.32	97.32
CDX69415	Canola	cytosol	91.19	91.54
AT5G16840.2	Thale cress	nucleus	87.74	88.08
CDY16974	Canola	plastid	91.57	75.16
CDX85485	Canola	plastid	88.12	73.02
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	57.85	61.89
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	64.37	60.43
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	63.98	60.29
Solyc03g097110.2.1	Tomato	nucleus	63.22	59.35
Os06t0112400-01	Rice	plasma membrane	58.62	58.62
EER89059	Sorghum	cytosol	59.39	57.62
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	60.54	56.83
HORVU7Hr1G003710.1	Barley	cytosol	56.7	56.27
TraesCS7D01G027100.1	Wheat	plastid	56.7	55.64
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	56.7	55.64
CDY01476	Canola	cytosol	30.27	55.24
CDY38083	Canola	nucleus	87.36	54.42
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	57.47	53.96
CDX78795	Canola	nucleus	57.09	49.17
KRH24024	Soybean	nucleus	54.41	48.63
CDY01477	Canola	cytosol	56.32	48.51
CDY60787	Canola	nucleus	56.32	48.51
CDX90453	Canola	cytosol	56.32	47.57
TraesCS7A01G030900.2	Wheat	plastid	56.7	46.98
CDY01473	Canola	nucleus	34.87	45.96
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	48.66	45.68
PGSC0003DMT400069547	Potato	nucleus	59.0	45.29
Zm00001d035920_P002	Maize	extracellular, vacuole	59.0	44.51
CDX90455	Canola	cytosol	35.25	44.23
Os04t0594400-01	Rice	plasma membrane	52.87	43.95
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	52.49	43.63
GSMUA_Achr8P14700_001	Banana	plastid	50.96	43.61
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.56	43.54
Zm00001d054082_P001	Maize	cytosol	47.13	43.46
EES12769	Sorghum	cytosol	52.11	43.31
Zm00001d002475_P001	Maize	extracellular	52.11	43.31
TraesCS2D01G444000.1	Wheat	extracellular	51.34	42.54
CDY60084	Canola	cytosol, nucleus, plastid	12.26	42.11
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	54.02	42.09
TraesCS2A01G445100.1	Wheat	extracellular	50.96	41.96
TraesCS2B01G466100.1	Wheat	extracellular	50.96	41.96
Solyc06g072770.2.1	Tomato	nucleus	58.24	41.76
Zm00001d031612_P001	Maize	cytosol	38.31	41.67
Zm00001d026150_P001	Maize	cytosol	38.31	41.67
CDY38176	Canola	cytosol	40.23	39.92
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	39.85	39.1
CDY62016	Canola	nucleus	34.87	38.89
Zm00001d046992_P001	Maize	cytosol	48.66	38.84
CDY49093	Canola	cytosol	36.4	38.78
CDX96860	Canola	nucleus	35.25	37.7
CDX84035	Canola	nucleus	35.25	37.7
CDY01872	Canola	cytosol, plastid	40.61	37.32
Os04t0624800-01	Rice	nucleus	50.57	35.11
OQU85574	Sorghum	nucleus	51.72	34.53
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	41.38	33.23
Zm00001d051524_P002	Maize	nucleus	50.57	32.75
CDX74287	Canola	cytosol	30.65	31.75
TraesCS6D01G249000.1	Wheat	nucleus, plastid	46.36	31.68
CDX91958	Canola	cytosol, nucleus, plastid	30.27	31.35
Zm00001d014267_P001	Maize	nucleus	50.19	31.04
TraesCS6A01G265600.1	Wheat	extracellular	47.13	30.98
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	45.98	30.23
Zm00001d046215_P001	Maize	cytosol	36.4	29.69

Protein Annotations

EnsemblPlants:CDX70721	EnsemblPlantsGene:GSBRNA2T00140588001	Gene3D:3.30.70.330	GO:A0A078C177	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44136	PANTHER:PTHR44136:SF6	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX70721	ProteinID:CDX70721.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE55F4	MapMan:35.1	:

Description

BnaC03g08050D

Coordinates

chrLK031791:+:1712929..1715108

Molecular Weight (calculated)

27303.7 Da

IEP (calculated)

4.879

GRAVY (calculated)

-0.312

Length

261 amino acids

Sequence
(BLAST)

001: MAIRSVKVGN LSSGATEHDI KEFFSFSGEV ESIDIQVNEH SAYVTFKDPQ GAETAVLLSG ASIADQSVTL EMAPDYTPPA APHAETQSGG VGGAAESVVQ
101: KAEDVVSSML AKGFILGKDA VGKAKAFDEK LGFTSTATAG VASVDQKIGL SQKFTAGTSL VNDKIKEVDQ SFQVSERTKS AFASAEQTVS SAGTAVMKNR
201: YVLTGVSWAA GAFNRVAKAA GEVSQKTKEK VEAEQPSQPS ESQQQPPEGY APIHSSEYSK N

Best Arabidopsis Sequence Match ( AT5G16840.3 )
(BLAST)

001: MAVRSVKVGN LSSGATEHDI KEFFSFSGEV ESIDIQSNEH SAYVTFKETQ GAETAVLLSG ASIADQSVII ELAPNYSPPA APHAETQSSG AESVVQKAED
101: VVSSMLAKGF ILGKDAVGKA KAFDEKHGFT STATAGVASL DQKIGLSQKL TAGTSLVNEK IKAVDQNFQV TERTKSVYAA AEQTVSSAGS AVMKNRYVLT
201: GVSWAAGAFN RVAQAAGEVG QKTKEKVEAE QPSQPAQSQQ QLPEGYSPIH SSEYSKN

Arabidopsis Description

BPA1binding partner of acd11 1 [Source:TAIR;Acc:AT5G16840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.