Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12769 | Sorghum | cytosol | 92.04 | 92.04 |
| Zm00001d002475_P001 | Maize | extracellular | 89.17 | 89.17 |
| Zm00001d031612_P001 | Maize | cytosol | 66.88 | 87.5 |
| Zm00001d026150_P001 | Maize | cytosol | 66.88 | 87.5 |
| Os04t0594400-01 | Rice | plasma membrane | 81.85 | 81.85 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 81.53 | 81.27 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 81.53 | 80.76 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 80.89 | 80.13 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 73.25 | 70.77 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 56.05 | 63.54 |
| KRH74377 | Soybean | endoplasmic reticulum | 55.73 | 62.72 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 56.05 | 62.41 |
| KRH39571 | Soybean | nucleus | 55.41 | 62.14 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 54.78 | 61.87 |
| PGSC0003DMT400038377 | Potato | cytosol | 55.1 | 61.57 |
| Solyc03g097110.2.1 | Tomato | nucleus | 54.46 | 61.51 |
| Solyc08g076530.2.1 | Tomato | plastid | 54.78 | 61.21 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 56.37 | 58.03 |
| CDY01476 | Canola | cytosol | 26.11 | 57.34 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 50.64 | 57.19 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 50.0 | 56.47 |
| CDY01477 | Canola | cytosol | 53.82 | 55.78 |
| Bra040177.1-P | Field mustard | nucleus | 53.18 | 55.3 |
| AT5G46870.1 | Thale cress | nucleus | 51.91 | 55.25 |
| CDX78795 | Canola | nucleus | 53.18 | 55.12 |
| CDX90453 | Canola | cytosol | 54.14 | 55.02 |
| Bra012646.1-P | Field mustard | nucleus | 54.46 | 54.81 |
| CDY60787 | Canola | nucleus | 52.55 | 54.46 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 53.82 | 53.99 |
| Zm00001d033766_P002 | Maize | cytosol, nucleus, plastid | 48.09 | 53.36 |
| Zm00001d054082_P001 | Maize | cytosol | 48.09 | 53.36 |
| Bra006373.1-P | Field mustard | cytosol | 43.63 | 52.49 |
| CDX70721 | Canola | cytosol | 43.63 | 52.49 |
| CDX78713 | Canola | cytosol | 43.63 | 52.49 |
| Zm00001d013419_P001 | Maize | cytosol, nucleus, plastid | 46.82 | 51.94 |
| AT5G16840.2 | Thale cress | nucleus | 42.99 | 51.92 |
| CDX69415 | Canola | cytosol | 42.99 | 51.92 |
| KRH24024 | Soybean | nucleus | 48.09 | 51.71 |
| Bra023585.1-P | Field mustard | nucleus | 41.4 | 51.38 |
| Bra008589.1-P | Field mustard | cytosol | 42.68 | 51.15 |
| Bra024988.1-P | Field mustard | vacuole | 53.18 | 50.15 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 53.18 | 49.85 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 52.87 | 49.85 |
| CDY01473 | Canola | nucleus | 30.89 | 48.99 |
| Zm00001d046992_P001 | Maize | cytosol | 49.68 | 47.71 |
| CDX90455 | Canola | cytosol | 31.53 | 47.6 |
| Bra012647.1-P | Field mustard | cytosol | 31.53 | 47.6 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 51.27 | 46.53 |
| PGSC0003DMT400069547 | Potato | nucleus | 47.77 | 44.12 |
| Zm00001d051524_P002 | Maize | nucleus | 56.37 | 43.92 |
| CDY16974 | Canola | plastid | 42.99 | 42.45 |
| Solyc06g072770.2.1 | Tomato | nucleus | 48.09 | 41.48 |
| Zm00001d014267_P001 | Maize | nucleus | 55.73 | 41.47 |
| CDX85485 | Canola | plastid | 41.4 | 41.27 |
| Zm00001d013271_P003 | Maize | cytosol | 36.31 | 40.57 |
| Zm00001d046215_P001 | Maize | cytosol | 39.49 | 38.75 |
| Zm00001d053093_P001 | Maize | cytosol, plastid | 35.35 | 35.02 |
| Zm00001d026425_P003 | Maize | cytosol | 27.07 | 34.84 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 25.48 | 32.13 |
| CDY38083 | Canola | nucleus | 41.08 | 30.79 |
| Zm00001d033453_P001 | Maize | cytosol | 25.16 | 23.51 |
Protein Annotations
| EnsemblPlants:Zm00001d026206_P001 | EnsemblPlants:Zm00001d026206_T001 | EnsemblPlantsGene:Zm00001d026206 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF5 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:AQK45841.1 |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000842B7A8 | UniProt:A0A1D6JDE0 | MapMan:35.1 | : |
Description
Putative RNA recognition motif containing family protein
Coordinates
chr10:-:140895681..140899119
Molecular Weight (calculated)
33088.0 Da
IEP (calculated)
4.569
GRAVY (calculated)
-0.174
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSTLSTVK VSNVSLKAAQ REIKEFFSFS GDIVHVEMQS GDELSQVAYI TFKDNQGAET AMLLTGATIV DMAVIVTPAN DYELPASVLA ALEPKDTKPS
101: ALQKAEDIVG TMLAKGFILG RDALDKAKAL DEKHQLTSTA TARVSSFDKR IGLSEKISVG TSVVNDKVKE MDQKYQVSEK TKSALAAAEQ SVSTAGSAIM
201: KNRYVLTGAA WVTGAFSKVT SAANDVGAKA EEKIAVEQED KNAEGGPGQA NISDIPAAHR ELDSEFANIH VSETPEDVPI STVTVPAVTD EEPSTATPAA
301: EVSKKPEAAQ GLIL
101: ALQKAEDIVG TMLAKGFILG RDALDKAKAL DEKHQLTSTA TARVSSFDKR IGLSEKISVG TSVVNDKVKE MDQKYQVSEK TKSALAAAEQ SVSTAGSAIM
201: KNRYVLTGAA WVTGAFSKVT SAANDVGAKA EEKIAVEQED KNAEGGPGQA NISDIPAAHR ELDSEFANIH VSETPEDVPI STVTVPAVTD EEPSTATPAA
301: EVSKKPEAAQ GLIL
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.