Factsheet for Zm00001d053093_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09901	Sorghum	plastid	90.22	92.86
Os11t0549537-00	Rice	mitochondrion, plastid	51.73	67.77
GSMUA_Achr4P00600_001	Banana	cytosol, nucleus, plastid	46.06	46.65
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	41.32	46.29
Zm00001d013419_P001	Maize	cytosol, nucleus, plastid	40.38	45.23
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	39.12	44.6
VIT_01s0011g06050.t01	Wine grape	cytosol	39.75	44.37
KRH49688	Soybean	nucleus	43.22	44.19
KRH70369	Soybean	cytosol	43.22	44.19
AT1G67950.2	Thale cress	cytosol	35.02	39.78
CDY01872	Canola	cytosol, plastid	34.07	38.03
Zm00001d026425_P003	Maize	cytosol	28.39	36.89
Zm00001d035920_P002	Maize	extracellular, vacuole	38.8	35.55
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	35.02	35.35
Zm00001d002475_P001	Maize	extracellular	34.38	34.71
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	26.5	33.73
Zm00001d054082_P001	Maize	cytosol	29.34	32.86
Zm00001d013271_P003	Maize	cytosol	28.39	32.03
Zm00001d046992_P001	Maize	cytosol	32.18	31.19
Zm00001d031612_P001	Maize	cytosol	23.03	30.42
Zm00001d026150_P001	Maize	cytosol	23.03	30.42
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	28.39	27.69
Zm00001d051524_P002	Maize	nucleus	32.18	25.31
Zm00001d014267_P001	Maize	nucleus	33.44	25.12
Zm00001d046215_P001	Maize	cytosol	22.08	21.88
Zm00001d033453_P001	Maize	cytosol	16.4	15.48

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	ProteinID:AQK58742.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7UP88	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR32343	PANTHER:PTHR32343:SF10	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002207EDB	EnsemblPlantsGene:Zm00001d053093	EnsemblPlants:Zm00001d053093_P001	EnsemblPlants:Zm00001d053093_T001	SEG:seg

Description

Putative RNA recognition motif containing family protein

Coordinates

chr4:-:213328070..213330853

Molecular Weight (calculated)

33133.5 Da

IEP (calculated)

5.402

GRAVY (calculated)

-0.223

Length

317 amino acids

Sequence
(BLAST)

001: MAVRLDPGSL RIAVAPAEFC TSSPSASASS SPQLCTSPNW TIDVSDVRTI KVTNVPLSAT AENMKEFFSF SGEIEYVEMR RDSETSQVAY VTFKEFHGAD
101: TALLLSGSSM CGDVSVNIAP VEDYELPPEA YSHAGARSPG PGTPTGEAVK KAEEVVSTML ARGFVLSKDA LRRAQSFDGR HQQLLSTATA RVASLDRRLG
201: LSDKFSLGTA AARGAARGVD ERFQVTERAW GAFSAAGEVV AGSPYASRGA AWVSAAVGAV ARAASDVGAM TMEKVGRAEE EGEASAAEHG HYASSRVDVH
301: DGQGGGAAQH GDHNKAM

Best Arabidopsis Sequence Match ( AT1G67950.1 )
(BLAST)

001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSEHSFN GFSVKKAEDV VNIMVGRGYA LGKDAMEKAK AFDDRHNLIS NASATIASLD DKMGLSEKLS IGTTVVNEKL RDIDERYQVR
201: EITKSALAAA EETAISARTA LMANPYVSSG ASWFSNAFGA VTKAVKEKVE NGGEGRKEII TLDPSSPKVP AVVPVKLG

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.