CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G67950.2	Thale cress	cytosol	80.63	82.08
VIT_01s0011g06050.t01	Wine grape	cytosol	53.17	53.17
Zm00001d013419_P001	Maize	cytosol, nucleus, plastid	50.7	50.88
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	50.35	50.53
TraesCS4A01G265800.1	Wheat	cytosol, nucleus, plastid	50.35	50.35
TraesCS4B01G049100.1	Wheat	cytosol, nucleus, plastid	50.35	50.35
CDY01476	Canola	cytosol	25.35	50.35
TraesCS4D01G049200.1	Wheat	cytosol, nucleus, plastid	49.65	49.65
Os03t0713600-01	Rice	cytosol	49.65	49.65
KRH70369	Soybean	cytosol	53.87	49.35
KRH49688	Soybean	nucleus	53.52	49.03
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	50.0	48.46
GSMUA_Achr4P00600_001	Banana	cytosol, nucleus, plastid	50.7	46.01
HORVU4Hr1G008120.3	Barley	plastid	51.06	44.48
CDY01477	Canola	cytosol	44.01	41.25
CDX90453	Canola	cytosol	44.72	41.1
CDY60787	Canola	nucleus	43.66	40.92
CDX78795	Canola	nucleus	43.66	40.92
CDX69415	Canola	cytosol	37.32	40.77
CDX78713	Canola	cytosol	37.32	40.61
CDX70721	Canola	cytosol	37.32	40.61
CDY38176	Canola	cytosol	33.8	36.5
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	33.45	35.71
GSMUA_Achr4P03340_001	Banana	nucleus	22.89	35.52
CDY62016	Canola	nucleus	28.52	34.62
EES09901	Sorghum	plastid	37.32	34.42
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	40.49	34.33
Os11t0549537-00	Rice	mitochondrion, plastid	29.23	34.3
CDY49093	Canola	cytosol	29.58	34.29
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	40.14	34.23
CDY60084	Canola	cytosol, nucleus, plastid	9.15	34.21
Zm00001d053093_P001	Maize	cytosol, plastid	38.03	34.07
CDX85485	Canola	plastid	37.68	33.97
CDY16974	Canola	plastid	38.03	33.96
CDX96860	Canola	nucleus	28.52	33.2
CDX84035	Canola	nucleus	27.82	32.38
CDY01473	Canola	nucleus	21.48	30.81
CDX90455	Canola	cytosol	21.83	29.81
CDX91958	Canola	cytosol, nucleus, plastid	24.3	27.38
CDX74287	Canola	cytosol	24.3	27.38
CDY38083	Canola	nucleus	38.03	25.78

Protein Annotations

EnsemblPlants:CDY01872	EnsemblPlantsGene:GSBRNA2T00113057001	Gene3D:3.30.70.330	GO:A0A078EL45	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44136	PANTHER:PTHR44136:SF2	PFAM:PF00076	PFscan:PS50102	ProteinID:CDY01872	ProteinID:CDY01872.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EF18AE	MapMan:35.1	:

Description

BnaC06g29120D

Coordinates

chrLK031929:+:975263..977111

Molecular Weight (calculated)

30744.2 Da

IEP (calculated)

4.740

GRAVY (calculated)

-0.268

Length

284 amino acids

Sequence
(BLAST)

001: MSAAFIPMDQ SQNNILMDSQ PTTSPVKTVK ISNVSLNVSK KDLNEFFSFS GDIHYIEMRS ETQETQLAYV TFKDPQGAET AMLLTGAVIA DHRVSITPAV
101: NYDLPPEALA LDSQEYSFNG FTVKKAEHVV STMMERGYAV GKDAMEKAKA FDDRHNLVSN ASATIASLDN KMGLSEKLSI GTTVVNEKLR EVDERYQVRE
201: ITKSALAAAE ERAISAGTAL MANPYVSSGA SWLSNAFGAV TKAVRAEDGG EGRKEIVQLD DTSPKAPAVV PVNSVDTDFT KPSF

Best Arabidopsis Sequence Match ( AT1G67950.3 )
(BLAST)

001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSQEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.