Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G265800.1 | Wheat | cytosol, nucleus, plastid | 99.65 | 99.65 |
| TraesCS4D01G049200.1 | Wheat | cytosol, nucleus, plastid | 99.3 | 99.3 |
| Os03t0713600-01 | Rice | cytosol | 88.03 | 88.03 |
| Zm00001d033766_P002 | Maize | cytosol, nucleus, plastid | 87.32 | 87.63 |
| Zm00001d013419_P001 | Maize | cytosol, nucleus, plastid | 85.21 | 85.51 |
| HORVU4Hr1G008120.3 | Barley | plastid | 97.89 | 85.28 |
| OQU91106 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 86.62 | 83.96 |
| VIT_01s0011g06050.t01 | Wine grape | cytosol | 63.03 | 63.03 |
| KRH49688 | Soybean | nucleus | 59.15 | 54.19 |
| KRH70369 | Soybean | cytosol | 58.8 | 53.87 |
| AT1G67950.2 | Thale cress | cytosol | 51.06 | 51.97 |
| CDY01872 | Canola | cytosol, plastid | 50.35 | 50.35 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 50.0 | 44.8 |
| GSMUA_Achr4P03340_001 | Banana | nucleus | 27.46 | 42.62 |
| TraesCS5B01G392900.1 | Wheat | cytosol | 40.49 | 42.28 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 48.94 | 35.01 |
| TraesCS2B01G551100.1 | Wheat | nucleus | 29.58 | 34.43 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G049100.1 | EnsemblPlantsGene:TraesCS4B01G049100 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR32343 |
| PANTHER:PTHR32343:SF11 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4B:-:37316377..37320441
Molecular Weight (calculated)
30889.4 Da
IEP (calculated)
4.601
GRAVY (calculated)
-0.242
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVRTVKVGN ISLSASKREI TEFFSFSGDI EYVEMQSETD WSQLAYVTFK DSQGADTAVL LSGATIVDLS VIITPVENYQ LPPEARKQLP GENSPSAESA
101: VRKAEDVVSS MMAKGFVLSK DALNMARSFD ERHNIMSTAT ATVVSLDHQY GLSEKISLGR AVVGSKVKEV DERYQVSELT RSALAAAEQK ASVAGSALMG
201: NQYVSAGASW LTSAFGMVTK AAGDMGSMAK DKVDKAEEER KAIMWEERNG LVSEYAKIHL DEHSSWEPAV LPVESMDEQK LQAV
101: VRKAEDVVSS MMAKGFVLSK DALNMARSFD ERHNIMSTAT ATVVSLDHQY GLSEKISLGR AVVGSKVKEV DERYQVSELT RSALAAAEQK ASVAGSALMG
201: NQYVSAGASW LTSAFGMVTK AAGDMGSMAK DKVDKAEEER KAIMWEERNG LVSEYAKIHL DEHSSWEPAV LPVESMDEQK LQAV
001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSQEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG
101: AVNYQLPPEA LALDSQEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.