CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	93.86	97.17
Zm00001d013419_P001	Maize	cytosol, nucleus, plastid	93.86	97.17
Os03t0713600-01	Rice	cytosol	86.69	89.44
TraesCS4A01G265800.1	Wheat	cytosol, nucleus, plastid	84.3	86.97
TraesCS4B01G049100.1	Wheat	cytosol, nucleus, plastid	83.96	86.62
TraesCS4D01G049200.1	Wheat	cytosol, nucleus, plastid	83.28	85.92
HORVU4Hr1G008120.3	Barley	plastid	84.98	76.38
VIT_01s0011g06050.t01	Wine grape	cytosol	60.41	62.32
EER89059	Sorghum	cytosol	50.17	54.65
KRH70369	Soybean	cytosol	57.0	53.87
KRH49688	Soybean	nucleus	56.66	53.55
AT1G67950.2	Thale cress	cytosol	49.15	51.61
CDY01872	Canola	cytosol, plastid	48.46	50.0
EES12769	Sorghum	cytosol	49.49	46.18
EER93456	Sorghum	cytosol	39.59	42.03
EES09901	Sorghum	plastid	43.69	41.56
GSMUA_Achr4P03340_001	Banana	nucleus	25.94	41.53
EES12950	Sorghum	cytosol, nucleus, plastid	30.72	36.89
OQU85574	Sorghum	nucleus	46.76	35.04

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8063378	UniProt:A0A1Z5S594	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlants:OQU91106
ProteinID:OQU91106	ProteinID:OQU91106.1	ProteinID:OQU91107.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR32343
PANTHER:PTHR32343:SF11	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G115300	SUPFAM:SSF54928
UniParc:UPI000B424EA4	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:8999096..9002911

Molecular Weight (calculated)

31890.7 Da

IEP (calculated)

4.791

GRAVY (calculated)

-0.216

Length

293 amino acids

Sequence
(BLAST)

001: MISVMAPNTK LQVKTVKVSN LSLNALKREI TEFFSFSGDI EYVEMQSESE WSQLAYVTFK DSQGADTAVL LSGATIVDRA VIITPAENYQ LPPEAHKQLS
101: GANPSTESAV RKAEDVVSSM LAKGFVLSKD ALNLARSFDE RHNILSNATA TVASLDRQYG LSEKINLGRA IVGSKVKEVD ERYQVSELTK SALAAAEQKA
201: SFAGSAILSN QYVSAGASWL TSAFGMVTKA AGDMTSMAKD KVERAEEERK AIMWEERNGL VSDYAKIHLD EPSSWEPAVL PLESVDEQKL QAV

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.