CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013271_P003	Maize	cytosol	96.74	95.02
Os03t0748900-01	Rice	cytosol	88.04	87.41
TraesCS5B01G392900.1	Wheat	cytosol	84.42	85.66
TraesCS5A01G387800.1	Wheat	cytosol	83.33	84.56
TraesCS5D01G397700.2	Wheat	cytosol	81.16	80.87
GSMUA_Achr4P10680_001	Banana	cytosol	69.57	72.45
GSMUA_Achr8P04640_001	Banana	cytosol	68.12	70.68
PGSC0003DMT400018578	Potato	cytosol	68.48	68.73
Solyc10g076890.1.1	Tomato	cytosol	67.75	68.5
VIT_08s0032g00290.t01	Wine grape	cytosol	65.94	67.91
Bra039914.1-P	Field mustard	cytosol	63.41	66.54
CDY38176	Canola	cytosol	63.41	66.54
KRH06674	Soybean	cytosol	65.94	65.94
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	63.04	65.41
KRG94865	Soybean	cytosol	58.33	65.18
HORVU5Hr1G095000.1	Barley	nucleus	84.42	63.14
AT5G32450.1	Thale cress	cytosol	60.87	62.92
CDY60084	Canola	cytosol, nucleus, plastid	14.13	51.32
EER89059	Sorghum	cytosol	43.12	44.24
GSMUA_AchrUn_...	Banana	cytosol	25.72	44.1
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	42.03	39.59
Zm00001d033453_P001	Maize	cytosol	45.65	37.5
EES12769	Sorghum	cytosol	42.03	36.94
EES12950	Sorghum	cytosol, nucleus, plastid	32.61	36.89
EES09901	Sorghum	plastid	33.33	29.87
OQU85574	Sorghum	nucleus	38.04	26.85

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:8086249	UniProt:C5X145	EnsemblPlants:EER93456	ProteinID:EER93456
ProteinID:EER93456.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR32343	PANTHER:PTHR32343:SF9
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G089500	SUPFAM:SSF54928	unigene:Sbi.2201
UniParc:UPI0001A82689	RefSeq:XP_002466458.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:6940066..6944275

Molecular Weight (calculated)

30137.8 Da

IEP (calculated)

9.842

GRAVY (calculated)

-0.287

Length

276 amino acids

Sequence
(BLAST)

001: MEEMGKRVVR TVRVRNISDL ATEREVREFF SFSGEIEHVD IRFDTVASGR TAYVTFKDPK ALEIALLLSG ATIVDQIVNI TPAEDYIYIP VTEQQLMVHE
101: VTSTSSAPNA ELEYSSEANT SPNSRVYVSK AHDVMTNVIA KGSAMRQDAV NKAKAFDEKH QLRANASARI NSFDKRVGLS EKINNGLSVV NEKVKSVDQR
201: LQVSDKTMAA LLAAERKLND TGSAVKTNRY VSAGTSWLNG AFSKVAKAGH VAGSRTREKF QLAVSNLTAK GPAVVA

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.