Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013271_P003 | Maize | cytosol | 38.69 | 46.26 |
| EER93456 | Sorghum | cytosol | 37.5 | 45.65 |
| TraesCS5B01G392900.1 | Wheat | cytosol | 35.71 | 44.12 |
| Os03t0748900-01 | Rice | cytosol | 36.01 | 43.53 |
| TraesCS5A01G387800.1 | Wheat | cytosol | 35.12 | 43.38 |
| TraesCS5D01G397700.2 | Wheat | cytosol | 35.42 | 42.96 |
| GSMUA_Achr4P10680_001 | Banana | cytosol | 32.74 | 41.51 |
| KRG94865 | Soybean | cytosol | 30.06 | 40.89 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.35 | 40.37 |
| VIT_08s0032g00290.t01 | Wine grape | cytosol | 30.65 | 38.43 |
| GSMUA_Achr8P04640_001 | Banana | cytosol | 30.06 | 37.97 |
| Bra039914.1-P | Field mustard | cytosol | 29.46 | 37.64 |
| CDY38176 | Canola | cytosol | 29.46 | 37.64 |
| PGSC0003DMT400018578 | Potato | cytosol | 30.65 | 37.45 |
| Solyc10g076890.1.1 | Tomato | cytosol | 30.36 | 37.36 |
| KRH06674 | Soybean | cytosol | 30.65 | 37.32 |
| CDY25131 | Canola | cytosol, mitochondrion, nucleus, plastid | 29.17 | 36.84 |
| AT5G32450.1 | Thale cress | cytosol | 28.87 | 36.33 |
| HORVU5Hr1G095000.1 | Barley | nucleus | 35.12 | 31.98 |
| Zm00001d033766_P002 | Maize | cytosol, nucleus, plastid | 22.92 | 27.21 |
| Zm00001d013419_P001 | Maize | cytosol, nucleus, plastid | 22.92 | 27.21 |
| Zm00001d026150_P001 | Maize | cytosol | 19.35 | 27.08 |
| Zm00001d031612_P001 | Maize | cytosol | 19.35 | 27.08 |
| Zm00001d002475_P001 | Maize | extracellular | 23.81 | 25.48 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 23.51 | 25.16 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 20.54 | 24.82 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 22.62 | 23.38 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 21.13 | 20.52 |
| Zm00001d054082_P001 | Maize | cytosol | 16.96 | 20.14 |
| Zm00001d046215_P001 | Maize | cytosol | 18.75 | 19.69 |
| Zm00001d046992_P001 | Maize | cytosol | 18.45 | 18.96 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 13.39 | 18.07 |
| Zm00001d051524_P002 | Maize | nucleus | 21.43 | 17.87 |
| Zm00001d026425_P003 | Maize | cytosol | 12.8 | 17.62 |
| Zm00001d014267_P001 | Maize | nucleus | 22.02 | 17.54 |
| Zm00001d053093_P001 | Maize | cytosol, plastid | 15.48 | 16.4 |
| CDY60084 | Canola | cytosol, nucleus, plastid | 2.38 | 10.53 |
Protein Annotations
| EnsemblPlants:Zm00001d033453_P001 | EnsemblPlants:Zm00001d033453_T001 | EnsemblPlantsGene:Zm00001d033453 | PANTHER:PTHR32343 | PANTHER:PTHR32343:SF9 | ProteinID:ONM07633.1 |
| SEG:seg | UniParc:UPI0008441104 | UniProt:A0A1D6KZ32 | MapMan:35.1 | : | : |
Description
RNA binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr1:+:263060510..263063368
Molecular Weight (calculated)
36587.1 Da
IEP (calculated)
9.884
GRAVY (calculated)
-0.352
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPLSFQGAT IVDQIVNITP AEDYIYIPVT EQQLMVHEVT SRSSASTAEL EYSSEVTHHW ANASARINSF DKRVGLSEKI NNGIYVVNER VKSVDQRLHV
101: SDKTMAALQA AERKLNDTGS AVKTNRYVSA GTSWLNGAFS KVAKAGHVAG SRTREKFQLA VSNLTAKLNN IFAHIYSRTG PDSRSVKKAL PGPCCCCLRG
201: MLVKKALFLR KIHWKLSFME GDNPFAAWRS LRRQGNNSAD VVAQQADTCD GAVYSSNLSN KTESLTARPE QASPASPYAL VAPTLTEAAH SWCRSRPSPS
301: LPSASPSPSA SSSSAWHGQR AILHSYLPHN VSSERA
101: SDKTMAALQA AERKLNDTGS AVKTNRYVSA GTSWLNGAFS KVAKAGHVAG SRTREKFQLA VSNLTAKLNN IFAHIYSRTG PDSRSVKKAL PGPCCCCLRG
201: MLVKKALFLR KIHWKLSFME GDNPFAAWRS LRRQGNNSAD VVAQQADTCD GAVYSSNLSN KTESLTARPE QASPASPYAL VAPTLTEAAH SWCRSRPSPS
301: LPSASPSPSA SSSSAWHGQR AILHSYLPHN VSSERA
001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.