Factsheet for Zm00001d031493_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003588_P002
Zm00001d003789_P002
Zm00001d005215_P001
Zm00001d009572_P001
Zm00001d010538_P005
Zm00001d034638_P001
Zm00001d035741_P002
Zm00001d038380_P001
Zm00001d039016_P001
Zm00001d043935_P001
Zm00001d045580_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	Zm00001d003588_P002	AT3G11730.1	21798944
AT4G17720.1	Zm00001d003789_P002	AT3G11730.1	21798944
AT4G17720.1	Zm00001d005215_P001	AT3G11730.1	21798944
AT4G17720.1	Zm00001d035741_P002	AT3G11730.1	21798944
AT4G17720.1	Zm00001d010538_P005	AT3G46060.1	21798944
AT4G17720.1	Zm00001d034638_P001	AT3G46060.1	21798944
AT4G17720.1	Zm00001d038380_P001	AT3G46060.1	21798944
AT4G17720.1	Zm00001d045580_P001	AT4G25680.1	21798944
AT4G17720.1	Zm00001d009572_P001	AT5G60860.1	21798944
AT4G17720.1	Zm00001d039016_P001	AT5G60860.1	21798944
AT4G17720.1	Zm00001d043935_P001	AT5G60860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031612_P001	Maize	cytosol	69.23	93.75
Zm00001d026150_P001	Maize	cytosol	69.23	93.75
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	70.77	73.25
EES12769	Sorghum	cytosol	68.0	70.38
Zm00001d002475_P001	Maize	extracellular	65.23	67.52
TraesCS2D01G444000.1	Wheat	extracellular	59.69	61.59
TraesCS2B01G466100.1	Wheat	extracellular	60.0	61.51
Os04t0594400-01	Rice	plasma membrane	59.38	61.47
TraesCS2A01G445100.1	Wheat	extracellular	59.69	61.2
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	40.92	48.01
VIT_02s0012g01860.t01	Wine grape	cytosol	41.54	47.87
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	40.62	47.48
PGSC0003DMT400038377	Potato	cytosol	40.92	47.33
Solyc08g076530.2.1	Tomato	plastid	40.92	47.33
Solyc03g097110.2.1	Tomato	nucleus	40.31	47.12
KRH74377	Soybean	endoplasmic reticulum	40.0	46.59
KRH39571	Soybean	nucleus	39.69	46.07
CDY01473	Canola	nucleus	27.69	45.45
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	38.15	44.6
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	37.85	44.24
CDX90455	Canola	cytosol	28.0	43.75
Bra012647.1-P	Field mustard	cytosol	28.0	43.75
GSMUA_Achr8P14700_001	Banana	plastid	40.62	43.28
Bra040177.1-P	Field mustard	nucleus	40.0	43.05
CDX78795	Canola	nucleus	40.0	42.9
CDY01477	Canola	cytosol	39.69	42.57
CDX90453	Canola	cytosol	40.31	42.39
Bra012646.1-P	Field mustard	nucleus	40.62	42.31
CDY60787	Canola	nucleus	39.38	42.24
AT5G46870.1	Thale cress	nucleus	38.15	42.03
AT5G16840.2	Thale cress	nucleus	33.54	41.92
CDX69415	Canola	cytosol	33.54	41.92
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	40.31	41.85
KRH24024	Soybean	nucleus	37.54	41.78
Bra006373.1-P	Field mustard	cytosol	33.54	41.76
CDX78713	Canola	cytosol	33.54	41.76
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	36.31	41.7
Bra008589.1-P	Field mustard	cytosol	33.54	41.6
CDX70721	Canola	cytosol	33.23	41.38
Zm00001d013419_P001	Maize	cytosol, nucleus, plastid	35.69	40.99
Zm00001d054082_P001	Maize	cytosol	35.69	40.99
Bra023585.1-P	Field mustard	nucleus	30.77	39.53
Bra024988.1-P	Field mustard	vacuole	40.31	39.34
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	40.31	39.1
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	39.69	38.74
CDY01476	Canola	cytosol	16.62	37.76
Zm00001d046992_P001	Maize	cytosol	36.92	36.7
Zm00001d035920_P002	Maize	extracellular, vacuole	38.46	36.13
Zm00001d046215_P001	Maize	cytosol	35.38	35.94
PGSC0003DMT400069547	Potato	nucleus	36.31	34.71
CDY16974	Canola	plastid	33.23	33.96
Zm00001d051524_P002	Maize	nucleus	40.92	33.0
Solyc06g072770.2.1	Tomato	nucleus	36.92	32.97
Zm00001d014267_P001	Maize	nucleus	41.54	31.99
CDX85485	Canola	plastid	30.77	31.75
Zm00001d013271_P003	Maize	cytosol	27.38	31.67
Zm00001d053093_P001	Maize	cytosol, plastid	27.69	28.39
Zm00001d026425_P003	Maize	cytosol	20.31	27.05
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	19.69	25.7
CDY38083	Canola	nucleus	30.77	23.87
Zm00001d033453_P001	Maize	cytosol	23.38	22.62

Protein Annotations

EnsemblPlants:Zm00001d031493_P001	EnsemblPlants:Zm00001d031493_T001	EnsemblPlantsGene:Zm00001d031493	Gene3D:3.60.20.10	InterPro:IPR029055	InterPro:Ntn_hydrolases_N
PANTHER:PTHR44136	PANTHER:PTHR44136:SF5	ProteinID:ONM02976.1	SUPFAM:SSF56235	UniParc:UPI000842CCC3	UniProt:A0A1D6KJ52
MapMan:35.1	:	:	:	:	:

Description

Binding partner of ACD11 1

Coordinates

chr1:+:191846071..191849645

Molecular Weight (calculated)

35089.3 Da

IEP (calculated)

7.131

GRAVY (calculated)

-0.147

Length

325 amino acids

Sequence
(BLAST)

001: MFPITDRLGL LATGIAGEGR SLAHEARNQT AEFCFNWGYE MPPYVLAQWP KNLRKILGGG MRQVGVMCAG AHTLWESLLG ATIVDMAVII TPANDYELPA
101: SVLAALEPKD TKPSALQKAE DIIGTMLAKG FILGRDTLDK AKALDEKHQL TSTATARVSS FDKRIGLSEK ISVGTSVVND KVKEMDQKYQ VSEKTKSVLV
201: AAEQSVLTAG SAIMKNMYVL TGAAWVTGAF SKVTSAANDV GAKAKEKIAV EQEDKNAEGG PGQANILEIP AAHRELDSEF ANIHVSETSE DVPMSSMTVP
301: LLQMRSPART VHQLKFLKSQ KLCRD

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.