Factsheet for Zm00001d013419_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	96.82	96.82
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	97.17	93.86
Os03t0713600-01	Rice	cytosol	88.69	88.38
TraesCS4A01G265800.1	Wheat	cytosol, nucleus, plastid	85.87	85.56
TraesCS4B01G049100.1	Wheat	cytosol, nucleus, plastid	85.51	85.21
TraesCS4D01G049200.1	Wheat	cytosol, nucleus, plastid	84.81	84.51
HORVU4Hr1G008120.3	Barley	plastid	85.51	74.23
VIT_01s0011g06050.t01	Wine grape	cytosol	62.54	62.32
KRH70369	Soybean	cytosol	59.01	53.87
KRH49688	Soybean	nucleus	58.66	53.55
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	51.24	52.16
AT1G67950.2	Thale cress	cytosol	50.88	51.61
CDY01872	Canola	cytosol, plastid	50.88	50.7
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	51.94	46.82
Zm00001d002475_P001	Maize	extracellular	50.18	45.22
Zm00001d035920_P002	Maize	extracellular, vacuole	50.88	41.62
Zm00001d054082_P001	Maize	cytosol	40.99	40.99
GSMUA_Achr4P03340_001	Banana	nucleus	26.15	40.44
Zm00001d026150_P001	Maize	cytosol	34.28	40.42
Zm00001d031612_P001	Maize	cytosol	34.28	40.42
Zm00001d053093_P001	Maize	cytosol, plastid	45.23	40.38
Zm00001d013271_P003	Maize	cytosol	39.93	40.21
Zm00001d026425_P003	Maize	cytosol	32.86	38.11
Zm00001d046992_P001	Maize	cytosol	42.4	36.7
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	31.8	36.14
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	40.99	35.69
Zm00001d051524_P002	Maize	nucleus	46.64	32.75
Zm00001d014267_P001	Maize	nucleus	45.94	30.81
Zm00001d046215_P001	Maize	cytosol	32.16	28.44
Zm00001d033453_P001	Maize	cytosol	27.21	22.92

Protein Annotations

EntrezGene:100274464	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:AQK63428.1	UniProt:B4FFG7	EMBL:BT035855
EMBL:BT043114	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR32343	PANTHER:PTHR32343:SF11
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00017B702B	EnsemblPlantsGene:Zm00001d013419
EnsemblPlants:Zm00001d013419_P001	EnsemblPlants:Zm00001d013419_T001	:	:	:	:

Description

RNA-binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr5:-:10874244..10878022

Molecular Weight (calculated)

30920.4 Da

IEP (calculated)

4.656

GRAVY (calculated)

-0.203

Length

283 amino acids

Sequence
(BLAST)

001: MEVKTVKVSN LSLNVLKREL TEFFSFSGDI EYVEMQSESE WSQLAYVTFK DSQGADTAVL LSGATIVDRA VIITPAENYQ LPPEAHKQLS GANVSTESAV
101: RKAEDVVSSM LAKGFVLSKD ALNLARSFDE RHNILSNATA TVASLDRQYG LSEKINLGRA IVGSKVKEVD ERYQVSELTK SALAAAEQKA SFAGSAILSN
201: QYVSVGASWL TSAFTLVTKA AGDMTSMAKD KVERAEEERK AIMWEERNGL VSDYAKIHLD EPSSWEPAVL PLESVDEQKL QAV

Best Arabidopsis Sequence Match ( AT1G67950.3 )
(BLAST)

001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSQEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.