Factsheet for VIT_01s0011g06050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0713600-01	Rice	cytosol	65.49	65.49
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	63.38	63.6
TraesCS4B01G049100.1	Wheat	cytosol, nucleus, plastid	63.03	63.03
TraesCS4A01G265800.1	Wheat	cytosol, nucleus, plastid	63.03	63.03
Zm00001d013419_P001	Maize	cytosol, nucleus, plastid	62.32	62.54
TraesCS4D01G049200.1	Wheat	cytosol, nucleus, plastid	62.32	62.32
KRH70369	Soybean	cytosol	67.96	62.26
KRH49688	Soybean	nucleus	67.25	61.61
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	62.32	60.41
GSMUA_Achr4P00600_001	Banana	cytosol, nucleus, plastid	63.38	57.51
VIT_02s0012g01860.t01	Wine grape	cytosol	55.28	55.67
AT1G67950.2	Thale cress	cytosol	54.23	55.2
HORVU4Hr1G008120.3	Barley	plastid	62.32	54.29
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	52.82	54.15
CDY01872	Canola	cytosol, plastid	53.17	53.17
VIT_08s0032g00290.t01	Wine grape	cytosol	41.55	44.03
GSMUA_Achr4P03340_001	Banana	nucleus	26.41	40.98
VIT_01s0026g01970.t01	Wine grape	cytosol, nucleus, plastid	35.21	40.65
EES09901	Sorghum	plastid	44.01	40.58
Os11t0549537-00	Rice	mitochondrion, plastid	34.15	40.08
Zm00001d053093_P001	Maize	cytosol, plastid	44.37	39.75

Protein Annotations

EntrezGene:100252458	wikigene:100252458	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CCB50768	ProteinID:CCB50768.1
UniProt:F6HFB9	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100252458	wikigene:LOC100252458	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002107F3D	ArrayExpress:VIT_01s0011g06050	EnsemblPlantsGene:VIT_01s0011g06050	EnsemblPlants:VIT_01s0011g06050.t01	RefSeq:XP_002281499
RefSeq:XP_002281499.2	RefSeq:XP_010649644.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:5816722..5821599

Molecular Weight (calculated)

30836.8 Da

IEP (calculated)

5.100

GRAVY (calculated)

-0.206

Length

284 amino acids

Sequence
(BLAST)

001: MSIRTVKVSN ISLAVTERDI KEFFSFSGDI QYVEMQREAE KTQLAYVTFK NSQGADTAVL LTGATIADLS VSITPVDNYQ LPPGALPPSP EEKLHTTNSA
101: VKKGEDVVST MLAKGFVLGK DAINKAKAFD EQHHLVSNAS ATVASIDRKM GLSEKLSIGT AVVNEKVKEM DERYQVFEKT KSALAIAEQK ASIAGSAIMN
201: NHYVATGASW VSSALSMVTK AAEDVSVMTR EKVGRAEEEK KEIIYREKMG FVNEYAQIHL DESPAGEPPI VPVDSVDDCK LGMI

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.