Factsheet for VIT_16s0039g01860.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	76.9	76.62
Solyc03g097110.2.1	Tomato	nucleus	76.17	75.9
VIT_02s0012g01860.t01	Wine grape	cytosol	74.73	73.4
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	64.62	73.36
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	70.76	70.5
EER89059	Sorghum	cytosol	62.45	64.31
Bra006373.1-P	Field mustard	cytosol	60.29	63.98
CDX78713	Canola	cytosol	60.29	63.98
CDX70721	Canola	cytosol	60.29	63.98
HORVU7Hr1G003710.1	Barley	cytosol	60.29	63.5
Os06t0112400-01	Rice	plasma membrane	59.57	63.22
TraesCS7D01G027100.1	Wheat	plastid	60.65	63.16
AT5G16840.2	Thale cress	nucleus	59.21	63.08
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	60.29	62.78
Bra023585.1-P	Field mustard	nucleus	56.68	62.06
CDX69415	Canola	cytosol	57.76	61.54
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	61.37	61.15
Bra008589.1-P	Field mustard	cytosol	57.04	60.31
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	59.21	58.99
KRH24024	Soybean	nucleus	62.09	58.9
GSMUA_Achr8P14700_001	Banana	plastid	63.18	57.38
Os04t0594400-01	Rice	plasma membrane	64.26	56.69
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	63.54	56.05
Zm00001d002475_P001	Maize	extracellular	63.18	55.73
EES12769	Sorghum	cytosol	63.18	55.73
TraesCS2D01G444000.1	Wheat	extracellular	62.09	54.6
PGSC0003DMT400069547	Potato	nucleus	66.79	54.41
TraesCS2A01G445100.1	Wheat	extracellular	61.73	53.94
TraesCS2B01G466100.1	Wheat	extracellular	61.73	53.94
TraesCS7A01G030900.2	Wheat	plastid	60.65	53.33
VIT_01s0011g06050.t01	Wine grape	cytosol	54.15	52.82
CDY16974	Canola	plastid	57.76	50.31
CDX85485	Canola	plastid	57.04	50.16
Zm00001d054082_P001	Maize	cytosol	50.9	49.82
Solyc06g072770.2.1	Tomato	nucleus	65.34	49.73
Zm00001d035920_P002	Maize	extracellular, vacuole	61.73	49.42
Zm00001d026150_P001	Maize	cytosol	41.52	47.92
Zm00001d031612_P001	Maize	cytosol	41.52	47.92
Os04t0624800-01	Rice	nucleus	61.37	45.21
Zm00001d046992_P001	Maize	cytosol	52.35	44.34
VIT_08s0032g00290.t01	Wine grape	cytosol	41.16	42.54
VIT_01s0026g01970.t01	Wine grape	cytosol, nucleus, plastid	36.82	41.46
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	48.01	40.92
TraesCS6D01G249000.1	Wheat	nucleus, plastid	56.32	40.84
OQU85574	Sorghum	nucleus	56.68	40.15
TraesCS6A01G265600.1	Wheat	extracellular	56.68	39.55
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	55.96	39.04
Zm00001d051524_P002	Maize	nucleus	56.32	38.71
CDY38083	Canola	nucleus	57.04	37.71
Zm00001d014267_P001	Maize	nucleus	55.6	36.49
Zm00001d046215_P001	Maize	cytosol	38.27	33.12

Protein Annotations

EntrezGene:100244246	wikigene:100244246	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CBI26505	ProteinID:CBI26505.3
UniProt:D7T7N4	EMBL:FN595750	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100244246	wikigene:LOC100244246	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGR:TC62579	UniParc:UPI00015C8EF3	ArrayExpress:VIT_16s0039g01860	EnsemblPlantsGene:VIT_16s0039g01860	EnsemblPlants:VIT_16s0039g01860.t01
InterPro:Vip1-like_RRM_plant	unigene:Vvi.1822	RefSeq:XP_002274164	RefSeq:XP_002274164.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:1781303..1786003

Molecular Weight (calculated)

29334.6 Da

IEP (calculated)

5.230

GRAVY (calculated)

-0.298

Length

277 amino acids

Sequence
(BLAST)

001: MAISTVKVSN VSLGASEQDI KEFFSFSGEI EYVEMQSENE RSQVAYVTFK DTQGAETAVL LSGATIVDMS VIIAPAPDYK LPAAASVQPR ATENTNVGAG
101: ESPLQKAEDV VSGMLAKGFI LGKDALNKAK SFDERHQFTS TASAKVVSLD QKIGLTDKIS MGTTLVKDKV GEMDQKFQVS EKTKTAFAAA EQTVSNAGSA
201: IMKNRYVLTG ASWVTGAFNK VAKAAGEVGQ KAKEKVAEEE QGRNVGQGYS QIHESESPKA ATSEQPSKPA PAQGLIL

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.