Factsheet for Solyc03g097110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008196	Potato	cytosol, mitochondrion, nucleus	98.92	98.92
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	75.9	76.17
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	64.39	73.36
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	70.86	70.86
Solyc08g076530.2.1	Tomato	plastid	69.78	69.04
Os06t0112400-01	Rice	plasma membrane	61.87	65.9
EER89059	Sorghum	cytosol	63.67	65.8
HORVU7Hr1G003710.1	Barley	cytosol	61.87	65.4
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	62.23	65.04
TraesCS7D01G027100.1	Wheat	plastid	61.87	64.66
AT5G16840.2	Thale cress	nucleus	59.71	63.85
CDX70721	Canola	cytosol	59.35	63.22
Bra006373.1-P	Field mustard	cytosol	58.99	62.84
CDX78713	Canola	cytosol	58.99	62.84
CDX69415	Canola	cytosol	58.27	62.31
Bra008589.1-P	Field mustard	cytosol	58.63	62.21
Bra023585.1-P	Field mustard	nucleus	55.76	61.26
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	61.15	61.15
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	56.83	56.83
GSMUA_Achr8P14700_001	Banana	plastid	61.87	56.39
Os04t0594400-01	Rice	plasma membrane	62.23	55.1
EES12769	Sorghum	cytosol	62.23	55.1
TraesCS7A01G030900.2	Wheat	plastid	61.87	54.6
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	61.51	54.46
Zm00001d002475_P001	Maize	extracellular	61.51	54.46
KRH24024	Soybean	nucleus	57.19	54.45
TraesCS2D01G444000.1	Wheat	extracellular	60.07	53.02
TraesCS2A01G445100.1	Wheat	extracellular	59.71	52.37
TraesCS2B01G466100.1	Wheat	extracellular	59.71	52.37
Solyc06g072770.2.1	Tomato	nucleus	67.27	51.37
CDY16974	Canola	plastid	58.27	50.94
Zm00001d035920_P002	Maize	extracellular, vacuole	63.31	50.87
Zm00001d054082_P001	Maize	cytosol	51.08	50.18
CDX85485	Canola	plastid	56.12	49.52
Zm00001d026150_P001	Maize	cytosol	41.73	48.33
Zm00001d031612_P001	Maize	cytosol	41.73	48.33
Zm00001d046992_P001	Maize	cytosol	52.52	44.65
Solyc10g076890.1.1	Tomato	cytosol	42.81	43.59
Os04t0624800-01	Rice	nucleus	57.91	42.82
OQU85574	Sorghum	nucleus	57.55	40.92
TraesCS6D01G249000.1	Wheat	nucleus, plastid	55.76	40.58
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	47.12	40.31
TraesCS6A01G265600.1	Wheat	extracellular	56.12	39.29
Zm00001d051524_P002	Maize	nucleus	56.83	39.21
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	55.4	38.79
CDY38083	Canola	nucleus	56.47	37.47
Zm00001d014267_P001	Maize	nucleus	56.12	36.97
Solyc02g067390.2.1	Tomato	cytosol	33.09	36.08
Zm00001d046215_P001	Maize	cytosol	39.21	34.06
Solyc05g007200.2.1	Tomato	mitochondrion	32.37	29.51

Protein Annotations

EnsemblPlants:Solyc03g097110.2.1	EnsemblPlantsGene:Solyc03g097110.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:Vip1-like_RRM_plant	PANTHER:PTHR44136	PANTHER:PTHR44136:SF6	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00027681A4	UniProt:K4BJC8	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3:-:59446020..59451661

Molecular Weight (calculated)

29543.0 Da

IEP (calculated)

5.848

GRAVY (calculated)

-0.281

Length

278 amino acids

Sequence
(BLAST)

001: MSARTVKVSN VSLSASEQDI KEFFSFSGDI EYVEMMSENE RSQIAYVTFK DLQGAETAVL LSGATIIDQS VTIVPEPDYE LPPTALVPIK ATESANAAGG
101: GSAIQKAEDV VSSMLAKGFI LGKDAVNKAK TFDEKHQFTS TASAKVASLD QKIGLSEKIN LGATIVNDKV KEMDQKFHVS EKTKSALAAA EQTVSTAGSA
201: IMKNRYVLTG ASWVTGAFNK VTKAAGEVGQ KTKEKMAEEQ QAKNSAEGYV PIHALSESPK ASKTEEPTKP SSPKGLIL

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.