Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017749 | Potato | cytosol | 94.9 | 94.9 |
| KRH01160 | Soybean | cytosol, nucleus, plastid | 58.82 | 58.82 |
| KRH40110 | Soybean | cytosol | 59.22 | 58.53 |
| GSMUA_Achr3P19960_001 | Banana | cytosol | 54.9 | 57.85 |
| AT3G01210.1 | Thale cress | cytosol | 50.2 | 51.41 |
| Bra001017.1-P | Field mustard | cytosol, nucleus, plastid | 49.8 | 50.4 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 49.8 | 50.4 |
| CDX74287 | Canola | cytosol | 49.8 | 50.4 |
| TraesCS2D01G523400.1 | Wheat | nucleus | 47.45 | 49.59 |
| TraesCS2B01G551100.1 | Wheat | nucleus | 47.06 | 49.18 |
| TraesCS2A01G521600.1 | Wheat | nucleus | 46.27 | 48.36 |
| Zm00001d026425_P003 | Maize | cytosol | 45.88 | 47.95 |
| HORVU2Hr1G115210.1 | Barley | cytosol, nucleus, plastid | 46.67 | 47.41 |
| EES12950 | Sorghum | cytosol, nucleus, plastid | 44.31 | 46.31 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 45.1 | 46.18 |
| Solyc05g007200.2.1 | Tomato | mitochondrion | 52.55 | 43.93 |
| Os04t0641400-02 | Rice | plastid | 48.63 | 43.21 |
| Solyc03g097110.2.1 | Tomato | nucleus | 36.08 | 33.09 |
| Solyc10g076890.1.1 | Tomato | cytosol | 34.51 | 32.23 |
| Solyc08g076530.2.1 | Tomato | plastid | 34.12 | 30.96 |
| Solyc06g072770.2.1 | Tomato | nucleus | 33.73 | 23.63 |
Protein Annotations
| EnsemblPlants:Solyc02g067390.2.1 | EnsemblPlantsGene:Solyc02g067390.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00027691D1 | UniProt:K4B771 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2:+:37593046..37596900
Molecular Weight (calculated)
27633.4 Da
IEP (calculated)
4.780
GRAVY (calculated)
-0.124
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MYLGHYTAEV TSLSTKATEK DVDDFFSHCG EIEQVEIIRL SEYASIAYVT FKDTYALETA ILLSGSTILD QCVHISRLEA HVDEDDPWDN YIDMVENGSS
101: SAVHTNQFVS TPGEAVTMAQ QVVETMIVKG YQLSKDALTK AKAFDESYHV SSTAAAKVAD LSNRVGLTDK IRSGMETVKC VDEKYHLSEL TMSAASFTGK
201: TAAAAATAVV SSSYFSKGAF WVSDVLHRAA KVAADLGNNG VKKETAPIEM NQIGK
101: SAVHTNQFVS TPGEAVTMAQ QVVETMIVKG YQLSKDALTK AKAFDESYHV SSTAAAKVAD LSNRVGLTDK IRSGMETVKC VDEKYHLSEL TMSAASFTGK
201: TAAAAATAVV SSSYFSKGAF WVSDVLHRAA KVAADLGNNG VKKETAPIEM NQIGK
001: MYPCGYVAQV TNLSPQATEK DVHRFFSHCG IVELVEITGC QGDALTAYVT FRDAYALDMA VLLSGATIVD QTVWISVYGV YLHESNNLRQ EEDYSVTVTR
101: SDAFASSPGE AITVAQQVVQ TMLAKGYVLS KDAIGKAKAL DESQRFSSLV ATKLAEISHY LGLTQNIQSS MELVRSADEK YHFSDFTKSA VLVTGTAAVA
201: AATITGKVAA AAATSVVNSR YFANGALWFS DALGRAAKAA AHIGGGGSN
101: SDAFASSPGE AITVAQQVVQ TMLAKGYVLS KDAIGKAKAL DESQRFSSLV ATKLAEISHY LGLTQNIQSS MELVRSADEK YHFSDFTKSA VLVTGTAAVA
201: AATITGKVAA AAATSVVNSR YFANGALWFS DALGRAAKAA AHIGGGGSN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9MAD0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.