Factsheet for Solyc06g072770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069547	Potato	nucleus	89.56	95.88
Solyc03g097110.2.1	Tomato	nucleus	51.37	67.27
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	44.23	65.98
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	49.73	65.34
Solyc08g076530.2.1	Tomato	plastid	48.35	62.63
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	47.8	62.59
Os06t0112400-01	Rice	plasma membrane	43.68	60.92
EER89059	Sorghum	cytosol	44.23	59.85
HORVU7Hr1G003710.1	Barley	cytosol	43.13	59.7
TraesCS7D01G027100.1	Wheat	plastid	43.13	59.02
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	43.13	59.02
Bra006373.1-P	Field mustard	cytosol	42.03	58.62
CDX78713	Canola	cytosol	42.03	58.62
CDX70721	Canola	cytosol	41.76	58.24
Bra023585.1-P	Field mustard	nucleus	40.38	58.1
AT5G16840.2	Thale cress	nucleus	41.21	57.69
CDX69415	Canola	cytosol	41.21	57.69
Bra008589.1-P	Field mustard	cytosol	41.48	57.63
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	42.86	56.12
KRH24024	Soybean	nucleus	40.66	50.68
TraesCS7A01G030900.2	Wheat	plastid	43.13	49.84
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	37.91	49.64
GSMUA_Achr8P14700_001	Banana	plastid	40.93	48.85
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	41.48	48.09
Zm00001d002475_P001	Maize	extracellular	41.48	48.09
EES12769	Sorghum	cytosol	41.48	48.09
CDY16974	Canola	plastid	41.76	47.8
Os04t0594400-01	Rice	plasma membrane	40.66	47.13
CDX85485	Canola	plastid	40.66	46.98
Zm00001d035920_P002	Maize	extracellular, vacuole	43.13	45.38
TraesCS2D01G444000.1	Wheat	extracellular	38.74	44.76
TraesCS2B01G466100.1	Wheat	extracellular	38.74	44.48
TraesCS2A01G445100.1	Wheat	extracellular	38.74	44.48
Zm00001d026150_P001	Maize	cytosol	28.57	43.33
Zm00001d031612_P001	Maize	cytosol	28.57	43.33
Zm00001d054082_P001	Maize	cytosol	33.52	43.11
Solyc10g076890.1.1	Tomato	cytosol	31.59	42.12
Zm00001d046992_P001	Maize	cytosol	34.62	38.53
TraesCS6D01G249000.1	Wheat	nucleus, plastid	39.56	37.7
Os04t0624800-01	Rice	nucleus	38.74	37.5
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	32.97	36.92
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	39.56	36.27
TraesCS6A01G265600.1	Wheat	extracellular	39.56	36.27
CDY38083	Canola	nucleus	41.21	35.8
OQU85574	Sorghum	nucleus	37.09	34.53
Solyc02g067390.2.1	Tomato	cytosol	23.63	33.73
Zm00001d051524_P002	Maize	nucleus	36.54	33.0
Zm00001d014267_P001	Maize	nucleus	35.44	30.57
Solyc05g007200.2.1	Tomato	mitochondrion	23.08	27.54
Zm00001d046215_P001	Maize	cytosol	23.9	27.19

Protein Annotations

EnsemblPlants:Solyc06g072770.2.1	EnsemblPlantsGene:Solyc06g072770.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44136	PANTHER:PTHR44136:SF6	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00027659B7	UniProt:K4C8Z7	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6:+:44873297..44877016

Molecular Weight (calculated)

38037.3 Da

IEP (calculated)

5.510

GRAVY (calculated)

-0.408

Length

364 amino acids

Sequence
(BLAST)

001: MSVKTVQVNN VSLGAKEQDI KEFFSFSGDI EYLEMKGESE RSQVAYVTFK DPQSAETAVL LSGATIVDQS ISIVLAPEYK LPPTASVSPV PNETTTAPAA
101: GSAIQKAEDV VSSMLAKGFI LGKDAVGKAK ALDERHKITS TTSATVASID QKYGLSEKIT TGATIVNHKV KEMDQKFQVS EKSKSAFAAA EQTVSNAGSA
201: IMKNRYALTG VTWAAGALSR VTKAAGEVGQ KTKEKLAEEE RRTFTKGHAQ ENTATSTKGS VQQQAADSAK GDVQELTPAS AKGDVQELAA ASAKGDVQEL
301: ATASAKGDVH ELAAASAKSD VQEHAATSAK SDVQEVAATS AKQEHTETQT GVEESTNPSL PPKA

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.