Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046992_P001 | Maize | cytosol | 98.23 | 85.02 |
| Zm00001d051524_P002 | Maize | nucleus | 96.47 | 67.74 |
| Zm00001d046215_P001 | Maize | cytosol | 72.79 | 64.38 |
| Zm00001d014267_P001 | Maize | nucleus | 94.7 | 63.51 |
| OQU85574 | Sorghum | nucleus | 86.57 | 62.66 |
| CDY01476 | Canola | cytosol | 26.5 | 52.45 |
| Os04t0624800-01 | Rice | nucleus | 69.26 | 52.13 |
| Solyc03g097110.2.1 | Tomato | nucleus | 50.18 | 51.08 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 50.18 | 51.08 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 49.82 | 50.9 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 66.78 | 49.48 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 47.7 | 48.56 |
| KRH74377 | Soybean | endoplasmic reticulum | 47.7 | 48.39 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 53.36 | 48.09 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 47.7 | 47.87 |
| KRH39571 | Soybean | nucleus | 47.35 | 47.86 |
| Zm00001d002475_P001 | Maize | extracellular | 53.0 | 47.77 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 66.78 | 47.61 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 66.43 | 47.36 |
| AT5G16840.2 | Thale cress | nucleus | 43.46 | 47.31 |
| CDX70721 | Canola | cytosol | 43.46 | 47.13 |
| CDX78713 | Canola | cytosol | 43.46 | 47.13 |
| Bra006373.1-P | Field mustard | cytosol | 43.46 | 47.13 |
| Bra023585.1-P | Field mustard | nucleus | 42.05 | 47.04 |
| Solyc08g076530.2.1 | Tomato | plastid | 46.64 | 46.98 |
| PGSC0003DMT400038377 | Potato | cytosol | 46.29 | 46.62 |
| Bra008589.1-P | Field mustard | cytosol | 41.7 | 45.04 |
| CDX69415 | Canola | cytosol | 41.34 | 45.0 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 48.41 | 44.92 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 43.46 | 44.24 |
| CDY01477 | Canola | cytosol | 46.64 | 43.56 |
| Bra040177.1-P | Field mustard | nucleus | 45.94 | 43.05 |
| CDX78795 | Canola | nucleus | 45.94 | 42.9 |
| Bra012646.1-P | Field mustard | nucleus | 47.0 | 42.63 |
| CDY60787 | Canola | nucleus | 45.58 | 42.57 |
| CDX90453 | Canola | cytosol | 46.29 | 42.39 |
| Zm00001d031612_P001 | Maize | cytosol | 35.69 | 42.08 |
| Zm00001d026150_P001 | Maize | cytosol | 35.69 | 42.08 |
| Zm00001d033766_P002 | Maize | cytosol, nucleus, plastid | 42.05 | 42.05 |
| AT5G46870.1 | Thale cress | nucleus | 43.46 | 41.69 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 45.58 | 41.21 |
| Zm00001d013419_P001 | Maize | cytosol, nucleus, plastid | 40.99 | 40.99 |
| KRH24024 | Soybean | nucleus | 41.34 | 40.07 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 47.35 | 38.73 |
| CDY01473 | Canola | nucleus | 26.86 | 38.38 |
| CDX85485 | Canola | plastid | 42.05 | 37.78 |
| CDY16974 | Canola | plastid | 42.4 | 37.74 |
| Bra012647.1-P | Field mustard | cytosol | 27.56 | 37.5 |
| CDX90455 | Canola | cytosol | 27.56 | 37.5 |
| PGSC0003DMT400069547 | Potato | nucleus | 44.17 | 36.76 |
| Bra024988.1-P | Field mustard | vacuole | 43.11 | 36.64 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 43.11 | 36.42 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 42.76 | 36.34 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 40.99 | 35.69 |
| Zm00001d026425_P003 | Maize | cytosol | 29.33 | 34.02 |
| Solyc06g072770.2.1 | Tomato | nucleus | 43.11 | 33.52 |
| Zm00001d013271_P003 | Maize | cytosol | 31.8 | 32.03 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 27.21 | 30.92 |
| Zm00001d053093_P001 | Maize | cytosol, plastid | 32.86 | 29.34 |
| CDY38083 | Canola | nucleus | 41.7 | 28.16 |
| Zm00001d033453_P001 | Maize | cytosol | 20.14 | 16.96 |
Protein Annotations
| EnsemblPlants:Zm00001d054082_P001 | EnsemblPlants:Zm00001d054082_T001 | EnsemblPlantsGene:Zm00001d054082 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF4 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:AQK61235.1 |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00022127DE | UniProt:A0A1D6QV64 | MapMan:35.1 | : |
Description
Binding partner of ACD11 1
Coordinates
chr4:-:246079495..246081636
Molecular Weight (calculated)
31031.7 Da
IEP (calculated)
4.625
GRAVY (calculated)
-0.317
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTGTVKVH NVSLKASEQD ISEFFSFFGE IVHVELKSCD ERSQFAYITF RDNQGAERDM LLTGATIEDM AVIITPAIDY KLPAFVLADL ESKNTGGMES
101: ALQKAEDIAV SMLAKGFVLG MDAVEKAKAF VEKHQLTSTA TAKVASLDRT MGLSQKFSTR TLVVNEKMKE MDEKYQVAEK TKSALAATEQ TVSTASSVIM
201: SNRYILTGAA WVTDAYNKVA TTTTDASKSI KERMMAEQEG ANQSGETAKV DLLEISEANE QEWKRHEDDS TKNVVQESPE MTC
101: ALQKAEDIAV SMLAKGFVLG MDAVEKAKAF VEKHQLTSTA TAKVASLDRT MGLSQKFSTR TLVVNEKMKE MDEKYQVAEK TKSALAATEQ TVSTASSVIM
201: SNRYILTGAA WVTDAYNKVA TTTTDASKSI KERMMAEQEG ANQSGETAKV DLLEISEANE QEWKRHEDDS TKNVVQESPE MTC
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.