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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole

Predictor Summary:
  • nucleus 4
  • plastid 2
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 4
  • plasma membrane 3
  • golgi 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX77703 Canola endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 97.6 97.01
AT5G46870.1 Thale cress nucleus 76.28 86.1
Bra040177.1-P Field mustard nucleus 64.56 71.19
Bra012646.1-P Field mustard nucleus 66.37 70.83
GSMUA_Achr9P23330_001 Banana nucleus, peroxisome, plastid 48.35 65.98
VIT_02s0012g01860.t01 Wine grape cytosol 55.26 65.25
Solyc08g076530.2.1 Tomato plastid 54.65 64.77
KRH74377 Soybean endoplasmic reticulum 54.05 64.52
PGSC0003DMT400038377 Potato cytosol 54.35 64.41
KRH39571 Soybean nucleus 54.05 64.29
GSMUA_AchrUn_... Banana cytosol, extracellular, nucleus 51.95 62.23
Bra012647.1-P Field mustard cytosol 35.74 57.21
Os06t0112400-01 Rice plasma membrane 43.84 55.94
TraesCS4A01G458600.1 Wheat cytosol, nucleus, plastid 44.44 55.64
TraesCS7D01G027100.1 Wheat plastid 44.44 55.64
HORVU7Hr1G003710.1 Barley cytosol 43.84 55.51
EER89059 Sorghum cytosol 44.74 55.39
Zm00001d045559_P002 Maize cytosol, endoplasmic reticulum, nucleus 45.05 53.96
Bra006373.1-P Field mustard cytosol 42.04 53.64
Zm00001d026206_P001 Maize cytosol, nucleus, plastid 50.15 53.18
Bra023585.1-P Field mustard nucleus 40.24 52.96
EES12769 Sorghum cytosol 48.95 51.91
Os04t0594400-01 Rice plasma membrane 48.65 51.59
Zm00001d002475_P001 Maize extracellular 48.65 51.59
Bra008589.1-P Field mustard cytosol 40.54 51.53
TraesCS2D01G444000.1 Wheat extracellular 48.65 51.43
GSMUA_Achr8P14700_001 Banana plastid 46.85 51.15
TraesCS2B01G466100.1 Wheat extracellular 48.65 51.1
TraesCS2A01G445100.1 Wheat extracellular 48.05 50.47
GSMUA_Achr5P14070_001 Banana cytosol, nucleus, plastid 41.14 49.28
TraesCS7A01G030900.2 Wheat plastid 45.05 47.62
Zm00001d026150_P001 Maize cytosol 33.63 46.67
Zm00001d031612_P001 Maize cytosol 33.63 46.67
Zm00001d035920_P002 Maize extracellular, vacuole 45.65 43.93
Zm00001d054082_P001 Maize cytosol 36.64 43.11
Bra039914.1-P Field mustard cytosol 32.13 40.68
Zm00001d031493_P001 Maize cytosol, mitochondrion, plastid 39.34 40.31
Os04t0624800-01 Rice nucleus 44.74 39.63
TraesCS6D01G249000.1 Wheat nucleus, plastid 45.35 39.53
Zm00001d046992_P001 Maize cytosol 38.14 38.84
TraesCS6A01G265600.1 Wheat extracellular 45.65 38.29
TraesCS6B01G292900.1 Wheat endoplasmic reticulum, extracellular 45.05 37.78
Bra019660.1-P Field mustard cytosol 26.73 36.48
OQU85574 Sorghum nucleus 42.34 36.06
Bra016705.1-P Field mustard nucleus 25.83 35.25
Zm00001d051524_P002 Maize nucleus 41.14 33.99
Zm00001d014267_P001 Maize nucleus 41.14 32.46
Bra001017.1-P Field mustard cytosol, nucleus, plastid 23.12 30.56
Zm00001d046215_P001 Maize cytosol 27.63 28.75
Protein Annotations
EnsemblPlants:Bra024988.1EnsemblPlants:Bra024988.1-PEnsemblPlantsGene:Bra024988Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sf
InterPro:RRM_domPANTHER:PTHR44136PANTHER:PTHR44136:SF5PFAM:PF00076PFscan:PS50102SEG:seg
SMART:SM00360SUPFAM:SSF54928UniParc:UPI000253FB0BUniProt:M4E882MapMan:35.1:
Description
AT5G46870 (E=4e-111) | RNA recognition motif (RRM)-containing protein
Coordinates
chrA06:-:24550741..24552478
Molecular Weight (calculated)
36136.3 Da
IEP (calculated)
5.001
GRAVY (calculated)
-0.498
Length
333 amino acids
Sequence
(BLAST)
001: MSVSFSYPEF LIRLELMVTV KVSNVSLAVT ERELKEFFSF SGEIVHLEMQ SENEGGSKLA YVTFKDLQGA ETAVLLTGAT IVDSSVTVTM SPDYQLPPDA
101: LASIESSKES DKSSSSSPPK EDVSVFRKAE DVVRNMISKG FILGKDAIAK AKSLDEKHQL TSTASAKVTS FDKRIGFTEK INTGTTAVSG KVKEVDQKFQ
201: VTEKTKSAIA AAEQTVSNAG STIMKNRYVL TGTTWVAGAF EKVSKAAEEV GQKAKEKVGR AQEDEEKKKE VDEVASVHFS ESPKALDQPE QDSKLSVSPK
301: DLDQPEHDSK LSESQLQPHK QEESTPSVAS GQP
Best Arabidopsis Sequence Match ( AT5G46870.1 )
(BLAST)
001: MSMVTVKVSN VSLEATERDL KEFFSFSGDI AYLETQSEND GSKLAYVTFK DLQGAETAVL LTGSTIVDSS VTVTMSPDYQ LPPDALASIE SLKESNKSSS
101: PTREDVSVFR KAEDVVSGMI SKGFVLGKDA IAKAKSLDEK HQLTSTASAR VTSFDKRIGF TEKINTGTTV VSEKVKEVDQ KFQVTEKTKS AIAAAEQTVS
201: NAGSAIMKNR YVLTGATWVT GAFNRVSKAA EEVGQKAKEK VGLAEEEEEE KKKVVDEVAI VHLTESPKAL DQSEQDSKLP ESKSQPHKEL NASVV
Arabidopsis Description
At5g46870 [Source:UniProtKB/TrEMBL;Acc:Q6NM69]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.