Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 97.6 | 97.01 |
AT5G46870.1 | Thale cress | nucleus | 76.28 | 86.1 |
Bra040177.1-P | Field mustard | nucleus | 64.56 | 71.19 |
Bra012646.1-P | Field mustard | nucleus | 66.37 | 70.83 |
GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 48.35 | 65.98 |
VIT_02s0012g01860.t01 | Wine grape | cytosol | 55.26 | 65.25 |
Solyc08g076530.2.1 | Tomato | plastid | 54.65 | 64.77 |
KRH74377 | Soybean | endoplasmic reticulum | 54.05 | 64.52 |
PGSC0003DMT400038377 | Potato | cytosol | 54.35 | 64.41 |
KRH39571 | Soybean | nucleus | 54.05 | 64.29 |
GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 51.95 | 62.23 |
Bra012647.1-P | Field mustard | cytosol | 35.74 | 57.21 |
Os06t0112400-01 | Rice | plasma membrane | 43.84 | 55.94 |
TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 44.44 | 55.64 |
TraesCS7D01G027100.1 | Wheat | plastid | 44.44 | 55.64 |
HORVU7Hr1G003710.1 | Barley | cytosol | 43.84 | 55.51 |
EER89059 | Sorghum | cytosol | 44.74 | 55.39 |
Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 45.05 | 53.96 |
Bra006373.1-P | Field mustard | cytosol | 42.04 | 53.64 |
Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 50.15 | 53.18 |
Bra023585.1-P | Field mustard | nucleus | 40.24 | 52.96 |
EES12769 | Sorghum | cytosol | 48.95 | 51.91 |
Os04t0594400-01 | Rice | plasma membrane | 48.65 | 51.59 |
Zm00001d002475_P001 | Maize | extracellular | 48.65 | 51.59 |
Bra008589.1-P | Field mustard | cytosol | 40.54 | 51.53 |
TraesCS2D01G444000.1 | Wheat | extracellular | 48.65 | 51.43 |
GSMUA_Achr8P14700_001 | Banana | plastid | 46.85 | 51.15 |
TraesCS2B01G466100.1 | Wheat | extracellular | 48.65 | 51.1 |
TraesCS2A01G445100.1 | Wheat | extracellular | 48.05 | 50.47 |
GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 41.14 | 49.28 |
TraesCS7A01G030900.2 | Wheat | plastid | 45.05 | 47.62 |
Zm00001d026150_P001 | Maize | cytosol | 33.63 | 46.67 |
Zm00001d031612_P001 | Maize | cytosol | 33.63 | 46.67 |
Zm00001d035920_P002 | Maize | extracellular, vacuole | 45.65 | 43.93 |
Zm00001d054082_P001 | Maize | cytosol | 36.64 | 43.11 |
Bra039914.1-P | Field mustard | cytosol | 32.13 | 40.68 |
Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 39.34 | 40.31 |
Os04t0624800-01 | Rice | nucleus | 44.74 | 39.63 |
TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 45.35 | 39.53 |
Zm00001d046992_P001 | Maize | cytosol | 38.14 | 38.84 |
TraesCS6A01G265600.1 | Wheat | extracellular | 45.65 | 38.29 |
TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 45.05 | 37.78 |
Bra019660.1-P | Field mustard | cytosol | 26.73 | 36.48 |
OQU85574 | Sorghum | nucleus | 42.34 | 36.06 |
Bra016705.1-P | Field mustard | nucleus | 25.83 | 35.25 |
Zm00001d051524_P002 | Maize | nucleus | 41.14 | 33.99 |
Zm00001d014267_P001 | Maize | nucleus | 41.14 | 32.46 |
Bra001017.1-P | Field mustard | cytosol, nucleus, plastid | 23.12 | 30.56 |
Zm00001d046215_P001 | Maize | cytosol | 27.63 | 28.75 |
Protein Annotations
EnsemblPlants:Bra024988.1 | EnsemblPlants:Bra024988.1-P | EnsemblPlantsGene:Bra024988 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
InterPro:RRM_dom | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF5 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000253FB0B | UniProt:M4E882 | MapMan:35.1 | : |
Description
AT5G46870 (E=4e-111) | RNA recognition motif (RRM)-containing protein
Coordinates
chrA06:-:24550741..24552478
Molecular Weight (calculated)
36136.3 Da
IEP (calculated)
5.001
GRAVY (calculated)
-0.498
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSFSYPEF LIRLELMVTV KVSNVSLAVT ERELKEFFSF SGEIVHLEMQ SENEGGSKLA YVTFKDLQGA ETAVLLTGAT IVDSSVTVTM SPDYQLPPDA
101: LASIESSKES DKSSSSSPPK EDVSVFRKAE DVVRNMISKG FILGKDAIAK AKSLDEKHQL TSTASAKVTS FDKRIGFTEK INTGTTAVSG KVKEVDQKFQ
201: VTEKTKSAIA AAEQTVSNAG STIMKNRYVL TGTTWVAGAF EKVSKAAEEV GQKAKEKVGR AQEDEEKKKE VDEVASVHFS ESPKALDQPE QDSKLSVSPK
301: DLDQPEHDSK LSESQLQPHK QEESTPSVAS GQP
101: LASIESSKES DKSSSSSPPK EDVSVFRKAE DVVRNMISKG FILGKDAIAK AKSLDEKHQL TSTASAKVTS FDKRIGFTEK INTGTTAVSG KVKEVDQKFQ
201: VTEKTKSAIA AAEQTVSNAG STIMKNRYVL TGTTWVAGAF EKVSKAAEEV GQKAKEKVGR AQEDEEKKKE VDEVASVHFS ESPKALDQPE QDSKLSVSPK
301: DLDQPEHDSK LSESQLQPHK QEESTPSVAS GQP
001: MSMVTVKVSN VSLEATERDL KEFFSFSGDI AYLETQSEND GSKLAYVTFK DLQGAETAVL LTGSTIVDSS VTVTMSPDYQ LPPDALASIE SLKESNKSSS
101: PTREDVSVFR KAEDVVSGMI SKGFVLGKDA IAKAKSLDEK HQLTSTASAR VTSFDKRIGF TEKINTGTTV VSEKVKEVDQ KFQVTEKTKS AIAAAEQTVS
201: NAGSAIMKNR YVLTGATWVT GAFNRVSKAA EEVGQKAKEK VGLAEEEEEE KKKVVDEVAI VHLTESPKAL DQSEQDSKLP ESKSQPHKEL NASVV
101: PTREDVSVFR KAEDVVSGMI SKGFVLGKDA IAKAKSLDEK HQLTSTASAR VTSFDKRIGF TEKINTGTTV VSEKVKEVDQ KFQVTEKTKS AIAAAEQTVS
201: NAGSAIMKNR YVLTGATWVT GAFNRVSKAA EEVGQKAKEK VGLAEEEEEE KKKVVDEVAI VHLTESPKAL DQSEQDSKLP ESKSQPHKEL NASVV
Arabidopsis Description
At5g46870 [Source:UniProtKB/TrEMBL;Acc:Q6NM69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.