Factsheet for Bra016705.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000895.1-P
Bra001418.1-P
Bra002620.1-P
Bra002925.1-P
Bra009662.1-P
Bra010218.1-P
Bra011302.1-P
Bra012908.1-P
Bra018576.1-P
Bra018622.1-P
Bra024431.1-P
Bra024951.1-P
Bra027937.1-P
Bra030729.1-P
Bra031843.1-P
Bra036294.1-P
Bra038169.1-P
Bra038676.1-P
Bra040022.1-P
Bra040545.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14340.1	Bra018622.1-P	AT1G08480.1	21798944
AT1G14340.1	Bra030729.1-P	AT1G08480.1	21798944
AT1G14340.1	Bra018576.1-P	AT1G09180.1	21798944
AT1G14340.1	Bra027937.1-P	AT1G56330.1	21798944
AT1G14340.1	Bra038169.1-P	AT1G56330.1	21798944
AT1G14340.1	Bra040545.1-P	AT3G01660.1	21798944
AT1G14340.1	Bra040022.1-P	AT3G07670.1	21798944
AT1G14340.1	Bra001418.1-P	AT3G11730.1	21798944
AT1G14340.1	Bra038676.1-P	AT3G11730.1	21798944
AT1G14340.1	Bra012908.1-P	AT3G50110.1	21798944
AT1G14340.1	Bra000895.1-P	AT4G02080.1	21798944
AT1G14340.1	Bra036294.1-P	AT4G02080.1	21798944
AT1G14340.1	Bra010218.1-P	AT4G31830.1	21798944
AT1G14340.1	Bra011302.1-P	AT4G31830.1	21798944
AT1G14340.1	Bra024951.1-P	AT5G47310.1	21798944
AT1G14340.1	Bra002925.1-P	AT5G55200.1	21798944
AT1G14340.1	Bra002620.1-P	AT5G58750.1	21798944
AT1G14340.1	Bra024431.1-P	AT5G65925.1	21798944
AT1G14340.1	Bra031843.1-P	AT5G65925.1	21798944
AT1G14340.1	Bra009662.1-P	AT5G66110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96860	Canola	nucleus	97.54	97.54
Bra019660.1-P	Field mustard	cytosol	89.34	89.34
AT1G14340.1	Thale cress	nucleus	84.84	84.84
VIT_01s0026g01970.t01	Wine grape	cytosol, nucleus, plastid	64.34	63.82
PGSC0003DMT400065786	Potato	cytosol, nucleus, plastid	60.66	60.41
GSMUA_Achr3P19960_001	Banana	cytosol	56.97	57.44
KRH69305	Soybean	nucleus	62.7	52.58
EES12950	Sorghum	cytosol, nucleus, plastid	51.64	51.64
Zm00001d026425_P003	Maize	cytosol	51.64	51.64
Zm00001d002122_P007	Maize	cytosol, nucleus, plastid	50.41	49.4
TraesCS2A01G521600.1	Wheat	nucleus	49.18	49.18
TraesCS2B01G551100.1	Wheat	nucleus	49.18	49.18
TraesCS2D01G523400.1	Wheat	nucleus	49.18	49.18
Solyc05g007200.2.1	Tomato	mitochondrion	60.66	48.52
HORVU2Hr1G115210.1	Barley	cytosol, nucleus, plastid	49.59	48.21
Os04t0641400-02	Rice	plastid	52.46	44.6
Bra001017.1-P	Field mustard	cytosol, nucleus, plastid	45.49	44.05
Bra023585.1-P	Field mustard	nucleus	38.11	36.76
Bra006373.1-P	Field mustard	cytosol	38.11	35.63
Bra008589.1-P	Field mustard	cytosol	37.7	35.11
Bra039914.1-P	Field mustard	cytosol	36.89	34.22
Bra040177.1-P	Field mustard	nucleus	39.34	31.79
Bra012646.1-P	Field mustard	nucleus	38.11	29.81
Bra024988.1-P	Field mustard	vacuole	35.25	25.83
Bra012647.1-P	Field mustard	cytosol	19.67	23.08

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra016705	EnsemblPlants:Bra016705.1	EnsemblPlants:Bra016705.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4DJM7
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF7	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002545C77	InterPro:Vip1-like_RRM_plant	SEG:seg

Description

AT1G14340 (E=2e-100) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA08:-:19618987..19619971

Molecular Weight (calculated)

26021.3 Da

IEP (calculated)

5.625

GRAVY (calculated)

-0.192

Length

244 amino acids

Sequence
(BLAST)

001: MDHQNGFGVE VTGLSPAVTE KDLIDFFSFS GAIEDIDIVR SGEQACTAYV MFKDSYSQET AVLLSGATIL EQRVCITRWG QHHEEFDFWN ATQRGFVDDT
101: NSHPHPQRGD FTAGEAVTKA QEVVKSMLAT GFVLGKEALA KAKGFDESHG VSAAAAARVS QLDQRIGLTD KIFAGVEAVR LTDQKYQVSD KARSAVSATG
201: RTAAAAATSV VSSSYFSSGA LWLSGALERA AKAASDLGSR GSRQ

Best Arabidopsis Sequence Match ( AT1G14340.1 )
(BLAST)

001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.