Factsheet for Bra040177.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001418.1-P
Bra002620.1-P
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra014069.1-P
Bra019475.1-P
Bra032216.1-P
Bra033830.1-P
Bra038265.1-P
Bra038676.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	Bra014069.1-P	AT1G47260.1	21798944
AT4G17720.1	Bra032216.1-P	AT1G47260.1	21798944
AT4G17720.1	Bra001418.1-P	AT3G11730.1	21798944
AT4G17720.1	Bra038676.1-P	AT3G11730.1	21798944
AT4G17720.1	Bra019475.1-P	AT3G46060.1	21798944
AT4G17720.1	Bra033830.1-P	AT3G46060.1	21798944
AT4G17720.1	Bra038265.1-P	AT3G46060.1	21798944
AT4G17720.1	Bra010452.1-P	AT4G25680.1	21798944
AT4G17720.1	Bra013908.1-P	AT4G25680.1	21798944
AT4G17720.1	Bra013910.1-P	AT4G25680.1	21798944
AT4G17720.1	Bra002620.1-P	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60787	Canola	nucleus	97.02	96.7
CDX78795	Canola	nucleus	97.02	96.7
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	89.4	86.26
Bra012646.1-P	Field mustard	nucleus	88.41	85.58
VIT_02s0012g01860.t01	Wine grape	cytosol	64.57	69.15
KRH39571	Soybean	nucleus	63.24	68.21
KRH74377	Soybean	endoplasmic reticulum	62.58	67.74
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	54.64	67.62
Solyc08g076530.2.1	Tomato	plastid	62.58	67.26
PGSC0003DMT400038377	Potato	cytosol	62.58	67.26
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	60.93	66.19
Bra024988.1-P	Field mustard	vacuole	71.19	64.56
Bra012647.1-P	Field mustard	cytosol	44.04	63.94
HORVU7Hr1G003710.1	Barley	cytosol	52.65	60.46
EER89059	Sorghum	cytosol	52.65	59.11
Os06t0112400-01	Rice	plasma membrane	50.99	59.0
TraesCS7D01G027100.1	Wheat	plastid	51.66	58.65
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	51.66	58.65
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	52.65	57.19
Bra006373.1-P	Field mustard	cytosol	48.68	56.32
Bra023585.1-P	Field mustard	nucleus	46.03	54.94
Bra008589.1-P	Field mustard	cytosol	46.69	53.82
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	55.3	53.18
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	48.68	52.88
GSMUA_Achr8P14700_001	Banana	plastid	52.98	52.46
Os04t0594400-01	Rice	plasma membrane	54.3	52.23
Zm00001d002475_P001	Maize	extracellular	54.3	52.23
EES12769	Sorghum	cytosol	54.3	52.23
TraesCS2D01G444000.1	Wheat	extracellular	53.64	51.43
TraesCS2B01G466100.1	Wheat	extracellular	53.31	50.79
TraesCS2A01G445100.1	Wheat	extracellular	52.98	50.47
TraesCS7A01G030900.2	Wheat	plastid	51.66	49.52
Zm00001d026150_P001	Maize	cytosol	38.74	48.75
Zm00001d031612_P001	Maize	cytosol	38.74	48.75
Zm00001d035920_P002	Maize	extracellular, vacuole	52.98	46.24
Zm00001d054082_P001	Maize	cytosol	43.05	45.94
Bra039914.1-P	Field mustard	cytosol	36.76	42.21
Os04t0624800-01	Rice	nucleus	50.99	40.96
Zm00001d046992_P001	Maize	cytosol	44.04	40.67
TraesCS6D01G249000.1	Wheat	nucleus, plastid	50.66	40.05
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	43.05	40.0
Bra016705.1-P	Field mustard	nucleus	31.79	39.34
Bra019660.1-P	Field mustard	cytosol	31.46	38.93
TraesCS6A01G265600.1	Wheat	extracellular	50.99	38.79
OQU85574	Sorghum	nucleus	49.67	38.36
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	50.33	38.29
Zm00001d051524_P002	Maize	nucleus	48.68	36.48
Zm00001d014267_P001	Maize	nucleus	47.68	34.12
Zm00001d046215_P001	Maize	cytosol	34.11	32.19
Bra001017.1-P	Field mustard	cytosol, nucleus, plastid	25.5	30.56

Protein Annotations

EnsemblPlants:Bra040177.1	EnsemblPlants:Bra040177.1-P	EnsemblPlantsGene:Bra040177	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44136	PANTHER:PTHR44136:SF5	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002545CCA	UniProt:M4FGE9	MapMan:35.1	:

Description

AT4G17720 (E=1e-125) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA01:-:4509843..4511021

Molecular Weight (calculated)

32374.1 Da

IEP (calculated)

5.313

GRAVY (calculated)

-0.355

Length

302 amino acids

Sequence
(BLAST)

001: MTSVKVSNVS LGATERDLKE FFSFSGDILY LEMHSETERS KLAYVTFKDL QGAETAVLLS GATIVDSSVI VTMAPDYQLS TEALASLEPK EDSSKSPRAS
101: VFRKAEDVVS SMLAKGFILG KDAIAKAKSV DEKHQLTSTA SARVASLDKK IGFTDKINTG TVVVGEKVRE VDHKYQVSEK TKSAIAAAEQ TVSNAGSAIM
201: KNRYVLTGAT WVTGAFSKVA KAAEEVGQMA KEKVGLAEEE DKRKVVDEFA RVHLSESPSA AASSEGEESK FSESPEAKKD SEHQEPPQVQ QAPPPPVALA
301: QP

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.