Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89059 | Sorghum | cytosol | 89.66 | 86.99 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 84.29 | 83.65 |
| TraesCS7D01G027100.1 | Wheat | plastid | 85.06 | 83.46 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 88.89 | 83.45 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 84.29 | 82.71 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 72.03 | 77.05 |
| TraesCS7A01G030900.2 | Wheat | plastid | 85.06 | 70.48 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 73.18 | 68.7 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 88.51 | 66.76 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 67.05 | 62.06 |
| Solyc03g097110.2.1 | Tomato | nucleus | 65.9 | 61.87 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 65.52 | 61.51 |
| Bra023585.1-P | Field mustard | nucleus | 59.0 | 60.87 |
| AT5G16840.2 | Thale cress | nucleus | 59.77 | 60.0 |
| CDX78713 | Canola | cytosol | 59.77 | 59.77 |
| Bra006373.1-P | Field mustard | cytosol | 59.77 | 59.77 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 63.22 | 59.57 |
| KRH39571 | Soybean | nucleus | 63.6 | 59.29 |
| KRH74377 | Soybean | endoplasmic reticulum | 63.22 | 59.14 |
| PGSC0003DMT400038377 | Potato | cytosol | 63.6 | 59.07 |
| CDY01476 | Canola | cytosol | 32.18 | 58.74 |
| CDX70721 | Canola | cytosol | 58.62 | 58.62 |
| CDX69415 | Canola | cytosol | 57.47 | 57.69 |
| Solyc08g076530.2.1 | Tomato | plastid | 62.07 | 57.65 |
| Bra008589.1-P | Field mustard | cytosol | 57.85 | 57.63 |
| CDY01477 | Canola | cytosol | 60.15 | 51.82 |
| Os03t0713600-01 | Rice | cytosol | 55.94 | 51.41 |
| CDX78795 | Canola | nucleus | 59.39 | 51.16 |
| Bra040177.1-P | Field mustard | nucleus | 59.0 | 50.99 |
| CDY60787 | Canola | nucleus | 59.0 | 50.83 |
| CDX90453 | Canola | cytosol | 60.15 | 50.81 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 60.92 | 50.8 |
| Bra012646.1-P | Field mustard | nucleus | 60.54 | 50.64 |
| Os04t0594400-01 | Rice | plasma membrane | 60.92 | 50.64 |
| AT5G46870.1 | Thale cress | nucleus | 56.7 | 50.17 |
| CDX85485 | Canola | plastid | 59.0 | 48.89 |
| CDY16974 | Canola | plastid | 58.62 | 48.11 |
| KRH24024 | Soybean | nucleus | 53.64 | 47.95 |
| PGSC0003DMT400069547 | Potato | nucleus | 60.54 | 46.47 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 56.7 | 44.18 |
| CDY01473 | Canola | nucleus | 33.33 | 43.94 |
| Bra024988.1-P | Field mustard | vacuole | 55.94 | 43.84 |
| Solyc06g072770.2.1 | Tomato | nucleus | 60.92 | 43.68 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.56 | 43.54 |
| Os03t0748900-01 | Rice | cytosol | 45.59 | 42.81 |
| CDX90455 | Canola | cytosol | 34.1 | 42.79 |
| Bra012647.1-P | Field mustard | cytosol | 34.1 | 42.79 |
| Os04t0624800-01 | Rice | nucleus | 57.85 | 40.16 |
| Os11t0549537-00 | Rice | mitochondrion, plastid | 34.1 | 36.78 |
| CDY38083 | Canola | nucleus | 58.62 | 36.52 |
| Os04t0641400-02 | Rice | plastid | 34.48 | 31.36 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4339900 | EMBL:AK061483 | EMBL:AK074027 | EMBL:AK099246 |
| EMBL:AK104301 | ProteinID:BAD67779.1 | ProteinID:BAF18508.2 | ProteinID:BAS95804.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os06g0112400 |
| EnsemblPlants:Os06t0112400-01 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR32343 | PANTHER:PTHR32343:SF10 | UniProt:Q5VRZ6 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000457C92 | InterPro:Vip1-like_RRM_plant |
| RefSeq:XP_015643736.1 | : | : | : | : | : |
Description
Aldo/keto reductase domain containing protein. (Os06t0112400-01)
Coordinates
chr6:+:699114..702164
Molecular Weight (calculated)
27764.8 Da
IEP (calculated)
6.693
GRAVY (calculated)
-0.254
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVKPVRTVK VTNVSLSATV QDIKEFFSFS GDIEHVEMQS GDEWSQVAYV TFKDPQGAET ALLLSGATIV DLSVIIAPAP EYQPPPTSSA PPMYSATSVP
101: VSEDNNVVHK AEDVVSTMLA KGFTLGKDAV GKAKAFDEKH GFTSTAGAKV ASIDRKIGLS EKFTIGTSIV NEKVKEMDQK FQVSDKTKSA FAAAEQKVST
201: AGSAIMKNRY VFTGASWVTN AFNKVAKAAT DVGTMTKEKM AAEDQHKGSG PSGGHSYTPI Q
101: VSEDNNVVHK AEDVVSTMLA KGFTLGKDAV GKAKAFDEKH GFTSTAGAKV ASIDRKIGLS EKFTIGTSIV NEKVKEMDQK FQVSDKTKSA FAAAEQKVST
201: AGSAIMKNRY VFTGASWVTN AFNKVAKAAT DVGTMTKEKM AAEDQHKGSG PSGGHSYTPI Q
001: MASQVRSVKV GNLSSGATEH DIKEFFSFSG EVESIDIQSS NEHSAYVTFK ETQGAETAVL LSGASIADQS VIIELAPNYS PPAAPHAETQ SSGAESVVQK
101: AEDVVSSMLA KGFILGKDAV GKAKAFDEKH GFTSTATAGV ASLDQKIGLS QKLTAGTSLV NEKIKAVDQN FQVTERTKSV YAAAEQTVSS AGSAVMKNRY
201: VLTGVSWAAG AFNRVAQAAG EVGQKTKEKV EAEQPSQPAQ SQQQLPEGYS PIHSSEYSKN
101: AEDVVSSMLA KGFILGKDAV GKAKAFDEKH GFTSTATAGV ASLDQKIGLS QKLTAGTSLV NEKIKAVDQN FQVTERTKSV YAAAEQTVSS AGSAVMKNRY
201: VLTGVSWAAG AFNRVAQAAG EVGQKTKEKV EAEQPSQPAQ SQQQLPEGYS PIHSSEYSKN
Arabidopsis Description
BPA1binding partner of acd11 1 [Source:TAIR;Acc:AT5G16840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.