CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68365
CDX73855
CDX77855
CDX86045
CDX89402
CDX89404
CDX94426
CDX94429
CDX99131
CDX99430
CDY17034
CDY23649
CDY30926
CDY47592
CDY47919
CDY49480
CDY52126
CDY56593
CDY62557
CDY64916
CDY66007
CDY67628
CDY67905
CDY71506

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	CDY17034	AT1G47260.1	21798944
AT4G17720.1	CDY23649	AT1G47260.1	21798944
AT4G17720.1	CDY47592	AT1G47260.1	21798944
AT4G17720.1	CDY67628	AT1G47260.1	21798944
AT4G17720.1	CDX73855	AT3G11730.1	21798944
AT4G17720.1	CDY47919	AT3G11730.1	21798944
AT4G17720.1	CDY56593	AT3G11730.1	21798944
AT4G17720.1	CDX68365	AT3G46060.1	21798944
AT4G17720.1	CDX77855	AT3G46060.1	21798944
AT4G17720.1	CDX86045	AT3G46060.1	21798944
AT4G17720.1	CDX99131	AT3G46060.1	21798944
AT4G17720.1	CDY30926	AT3G46060.1	21798944
AT4G17720.1	CDY71506	AT3G46060.1	21798944
AT4G17720.1	CDX99430	AT4G18800.1	21798944
AT4G17720.1	CDY62557	AT4G18800.1	21798944
AT4G17720.1	CDY64916	AT4G18800.1	21798944
AT4G17720.1	CDX89402	AT4G25680.1	21798944
AT4G17720.1	CDX89404	AT4G25680.1	21798944
AT4G17720.1	CDX94426	AT4G25680.1	21798944
AT4G17720.1	CDX94429	AT4G25680.1	21798944
AT4G17720.1	CDY49480	AT4G25680.1	21798944
AT4G17720.1	CDY66007	AT4G25680.1	21798944
AT4G17720.1	CDY52126	AT5G58750.1	21798944
AT4G17720.1	CDY67905	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012647.1-P	Field mustard	cytosol	100.0	100.0
CDY01473	Canola	nucleus	61.06	64.14
CDY01477	Canola	cytosol	67.79	46.53
CDX90453	Canola	cytosol	67.79	45.63
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	67.79	45.05
CDY60787	Canola	nucleus	63.94	43.89
CDX78795	Canola	nucleus	63.46	43.56
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	49.52	42.21
VIT_02s0012g01860.t01	Wine grape	cytosol	56.25	41.49
KRH74377	Soybean	endoplasmic reticulum	54.81	40.86
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	54.33	40.65
Solyc08g076530.2.1	Tomato	plastid	54.81	40.57
KRH39571	Soybean	nucleus	54.33	40.36
PGSC0003DMT400038377	Potato	cytosol	54.33	40.21
CDY01476	Canola	cytosol	26.92	39.16
Zm00001d026150_P001	Maize	cytosol	42.79	37.08
Zm00001d031612_P001	Maize	cytosol	42.79	37.08
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	58.65	36.42
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.21	35.74
CDX70721	Canola	cytosol	44.23	35.25
CDX78713	Canola	cytosol	44.23	35.25
EER89059	Sorghum	cytosol	45.19	34.94
HORVU7Hr1G003710.1	Barley	cytosol	43.75	34.6
CDX69415	Canola	cytosol	42.79	34.23
Os06t0112400-01	Rice	plasma membrane	42.79	34.1
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	42.79	33.46
TraesCS7D01G027100.1	Wheat	plastid	42.79	33.46
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	44.23	33.09
Os04t0594400-01	Rice	plasma membrane	48.56	32.17
GSMUA_Achr8P14700_001	Banana	plastid	47.12	32.13
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	47.6	31.53
TraesCS2D01G444000.1	Wheat	extracellular	47.6	31.43
TraesCS2B01G466100.1	Wheat	extracellular	47.6	31.23
TraesCS2A01G445100.1	Wheat	extracellular	47.12	30.91
Zm00001d002475_P001	Maize	extracellular	46.63	30.89
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	40.87	30.58
EES12769	Sorghum	cytosol	46.15	30.57
CDY16974	Canola	plastid	43.27	28.3
TraesCS7A01G030900.2	Wheat	plastid	42.79	28.25
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	43.75	28.0
CDX85485	Canola	plastid	41.83	27.62
Zm00001d054082_P001	Maize	cytosol	37.5	27.56
Zm00001d035920_P002	Maize	extracellular, vacuole	45.19	27.17
Os04t0624800-01	Rice	nucleus	46.63	25.8
CDY38176	Canola	cytosol	31.73	25.1
CDY25131	Canola	cytosol, mitochondrion, nucleus, plastid	31.25	24.44
Zm00001d046215_P001	Maize	cytosol	37.5	24.38
TraesCS6D01G249000.1	Wheat	nucleus, plastid	44.71	24.35
Zm00001d046992_P001	Maize	cytosol	37.5	23.85
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	44.71	23.43
TraesCS6A01G265600.1	Wheat	extracellular	44.23	23.17
OQU85574	Sorghum	nucleus	43.27	23.02
CDY01872	Canola	cytosol, plastid	29.81	21.83
Zm00001d051524_P002	Maize	nucleus	41.35	21.34
CDY38083	Canola	nucleus	42.31	21.0
Zm00001d014267_P001	Maize	nucleus	40.87	20.14
CDY62016	Canola	nucleus	22.6	20.09
CDX96860	Canola	nucleus	23.56	20.08
CDY49093	Canola	cytosol	23.56	20.0
CDX84035	Canola	nucleus	23.08	19.67
CDX74287	Canola	cytosol	20.19	16.67
CDX91958	Canola	cytosol, nucleus, plastid	20.19	16.67
CDY60084	Canola	cytosol, nucleus, plastid	2.88	7.89

Protein Annotations

EnsemblPlants:CDX90455	EnsemblPlantsGene:GSBRNA2T00151067001	PANTHER:PTHR44136	PANTHER:PTHR44136:SF5	ProteinID:CDX90455	ProteinID:CDX90455.1
UniParc:UPI00025409AB	MapMan:35.1	:	:	:	:

Description

BnaA03g43260D

Coordinates

chrLK031863:+:315823..317646

Molecular Weight (calculated)

22506.8 Da

IEP (calculated)

8.797

GRAVY (calculated)

-0.411

Length

208 amino acids

Sequence
(BLAST)

001: MEKAALIFIG KHGQSICVDT DCECPVQNYG ALPDDTNCGV AACIDYCKAK GEERKYSSKS LRAGESVLRK AEDVVSSMLA KGFILGKDAI AKAKSVEEKH
101: QLTSTASAKV ASLDKKLGFH RQDQHRNSRA IAATEQSVSN AGSAIMKNRY VLTGATWVTG AFNKVAKVAE EVGQKAKEKV GMAEEEDKRK VVDEFARVHL
201: SESPKINV

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.