Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90455 | Canola | cytosol | 64.14 | 61.06 |
| CDY01477 | Canola | cytosol | 89.9 | 58.75 |
| CDX90453 | Canola | cytosol | 90.4 | 57.93 |
| CDY01476 | Canola | cytosol | 38.89 | 53.85 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 84.34 | 53.35 |
| CDY60787 | Canola | nucleus | 81.31 | 53.14 |
| CDX78795 | Canola | nucleus | 80.81 | 52.81 |
| Solyc08g076530.2.1 | Tomato | plastid | 60.61 | 42.7 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 60.61 | 42.55 |
| PGSC0003DMT400038377 | Potato | cytosol | 60.1 | 42.35 |
| KRH74377 | Soybean | endoplasmic reticulum | 58.08 | 41.22 |
| KRH39571 | Soybean | nucleus | 58.08 | 41.07 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 49.49 | 40.16 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 55.56 | 39.57 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 66.16 | 39.1 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 65.15 | 38.74 |
| Zm00001d031612_P001 | Maize | cytosol | 45.96 | 37.92 |
| Zm00001d026150_P001 | Maize | cytosol | 45.96 | 37.92 |
| EER89059 | Sorghum | cytosol | 47.98 | 35.32 |
| CDX70721 | Canola | cytosol | 45.96 | 34.87 |
| CDX78713 | Canola | cytosol | 45.45 | 34.48 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 44.95 | 33.84 |
| Os06t0112400-01 | Rice | plasma membrane | 43.94 | 33.33 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 46.46 | 33.09 |
| CDX69415 | Canola | cytosol | 43.43 | 33.08 |
| TraesCS7D01G027100.1 | Wheat | plastid | 43.94 | 32.71 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 43.94 | 32.71 |
| Os04t0594400-01 | Rice | plasma membrane | 50.51 | 31.85 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 48.99 | 31.8 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 48.99 | 30.89 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 48.99 | 30.79 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 48.99 | 30.6 |
| EES12769 | Sorghum | cytosol | 48.48 | 30.57 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 48.48 | 30.28 |
| Zm00001d002475_P001 | Maize | extracellular | 47.98 | 30.25 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 41.92 | 29.86 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 45.45 | 27.69 |
| CDY16974 | Canola | plastid | 44.44 | 27.67 |
| TraesCS7A01G030900.2 | Wheat | plastid | 43.94 | 27.62 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 46.97 | 26.88 |
| Zm00001d054082_P001 | Maize | cytosol | 38.38 | 26.86 |
| CDX85485 | Canola | plastid | 42.42 | 26.67 |
| Zm00001d046215_P001 | Maize | cytosol | 41.92 | 25.94 |
| Os04t0624800-01 | Rice | nucleus | 46.97 | 24.73 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 46.97 | 24.35 |
| Zm00001d046992_P001 | Maize | cytosol | 38.89 | 23.55 |
| OQU85574 | Sorghum | nucleus | 46.46 | 23.53 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 46.46 | 23.17 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 46.46 | 23.17 |
| CDY38176 | Canola | cytosol | 30.3 | 22.81 |
| CDY25131 | Canola | cytosol, mitochondrion, nucleus, plastid | 29.8 | 22.18 |
| CDY01872 | Canola | cytosol, plastid | 30.81 | 21.48 |
| Zm00001d051524_P002 | Maize | nucleus | 43.43 | 21.34 |
| CDX96860 | Canola | nucleus | 26.26 | 21.31 |
| CDX84035 | Canola | nucleus | 26.26 | 21.31 |
| CDY49093 | Canola | cytosol | 25.25 | 20.41 |
| CDY38083 | Canola | nucleus | 42.93 | 20.29 |
| CDY62016 | Canola | nucleus | 23.74 | 20.09 |
| Zm00001d014267_P001 | Maize | nucleus | 42.42 | 19.91 |
| CDX74287 | Canola | cytosol | 20.2 | 15.87 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 20.2 | 15.87 |
| CDY60084 | Canola | cytosol, nucleus, plastid | 2.02 | 5.26 |
Protein Annotations
| EnsemblPlants:CDY01473 | EnsemblPlantsGene:GSBRNA2T00112479001 | ncoils:Coil | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF5 | ProteinID:CDY01473 |
| ProteinID:CDY01473.1 | SEG:seg | UniParc:UPI0004EB31CE | MapMan:35.1 | : | : |
Description
BnaC07g34630D
Coordinates
chrLK031927:-:24262..25276
Molecular Weight (calculated)
21603.6 Da
IEP (calculated)
10.100
GRAVY (calculated)
-0.709
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MYTGFNERKD SSKSLRAGES VLRKAEDVVS SMLAKGFILG KDAIAKAKSV EEKHQLTSTA SAKVASLDKK LGFTDKINTG TVVVGDKVRE VDHKHQTVSN
101: AGSAIMKNRY VLTGATWVTG AFNKVAKAAE EVGQKAKEKV GMAEEEDKRK VVDEFARVHL SESPKPPSSK DEDVHEPRRF ESPRQQQQTS PPVAPAQP
101: AGSAIMKNRY VLTGATWVTG AFNKVAKAAE EVGQKAKEKV GMAEEEDKRK VVDEFARVHL SESPKPPSSK DEDVHEPRRF ESPRQQQQTS PPVAPAQP
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.