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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68365
CDX73855
CDX77855
CDX86045
CDX89402
CDX89404
CDX94426
CDX94429
CDX99131
CDX99430
CDY17034
CDY23649
CDY30926
CDY47592
CDY47919
CDY49480
CDY52126
CDY56593
CDY62557
CDY64916
CDY66007
CDY67628
CDY67905
CDY71506

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17720.1 CDY17034 AT1G47260.1 21798944
AT4G17720.1 CDY23649 AT1G47260.1 21798944
AT4G17720.1 CDY47592 AT1G47260.1 21798944
AT4G17720.1 CDY67628 AT1G47260.1 21798944
AT4G17720.1 CDX73855 AT3G11730.1 21798944
AT4G17720.1 CDY47919 AT3G11730.1 21798944
AT4G17720.1 CDY56593 AT3G11730.1 21798944
AT4G17720.1 CDX68365 AT3G46060.1 21798944
AT4G17720.1 CDX77855 AT3G46060.1 21798944
AT4G17720.1 CDX86045 AT3G46060.1 21798944
AT4G17720.1 CDX99131 AT3G46060.1 21798944
AT4G17720.1 CDY30926 AT3G46060.1 21798944
AT4G17720.1 CDY71506 AT3G46060.1 21798944
AT4G17720.1 CDX99430 AT4G18800.1 21798944
AT4G17720.1 CDY62557 AT4G18800.1 21798944
AT4G17720.1 CDY64916 AT4G18800.1 21798944
AT4G17720.1 CDX89402 AT4G25680.1 21798944
AT4G17720.1 CDX89404 AT4G25680.1 21798944
AT4G17720.1 CDX94426 AT4G25680.1 21798944
AT4G17720.1 CDX94429 AT4G25680.1 21798944
AT4G17720.1 CDY49480 AT4G25680.1 21798944
AT4G17720.1 CDY66007 AT4G25680.1 21798944
AT4G17720.1 CDY52126 AT5G58750.1 21798944
AT4G17720.1 CDY67905 AT5G58750.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY01477 Canola cytosol 91.61 43.23
CDX90453 Canola cytosol 91.61 42.39
CDY60787 Canola nucleus 89.51 42.24
CDX78795 Canola nucleus 88.81 41.91
AT4G17720.1 Thale cress cytosol, nucleus, plastid 89.51 40.89
CDY01473 Canola nucleus 53.85 38.89
GSMUA_Achr9P23330_001 Banana nucleus, peroxisome, plastid 63.64 37.3
CDY60084 Canola cytosol, nucleus, plastid 18.88 35.53
PGSC0003DMT400038377 Potato cytosol 67.83 34.52
Solyc08g076530.2.1 Tomato plastid 67.83 34.52
VIT_02s0012g01860.t01 Wine grape cytosol 67.13 34.04
KRH39571 Soybean nucleus 65.03 33.21
GSMUA_AchrUn_... Banana cytosol, extracellular, nucleus 64.34 33.09
EER89059 Sorghum cytosol 62.24 33.09
KRH74377 Soybean endoplasmic reticulum 64.34 32.97
Zm00001d045559_P002 Maize cytosol, endoplasmic reticulum, nucleus 62.94 32.37
Os06t0112400-01 Rice plasma membrane 58.74 32.18
TraesCS4A01G458600.1 Wheat cytosol, nucleus, plastid 58.74 31.58
TraesCS7D01G027100.1 Wheat plastid 58.74 31.58
HORVU7Hr1G003710.1 Barley cytosol 58.04 31.56
CDY33486 Canola endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 72.73 31.23
CDX77703 Canola endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 71.33 30.45
CDX70721 Canola cytosol 55.24 30.27
CDX78713 Canola cytosol 54.55 29.89
CDX69415 Canola cytosol 53.15 29.23
GSMUA_Achr5P14070_001 Banana cytosol, nucleus, plastid 54.55 28.06
GSMUA_Achr8P14700_001 Banana plastid 58.74 27.54
CDX90455 Canola cytosol 39.16 26.92
TraesCS7A01G030900.2 Wheat plastid 58.74 26.67
Zm00001d054082_P001 Maize cytosol 52.45 26.5
EES12769 Sorghum cytosol 58.04 26.43
Zm00001d002475_P001 Maize extracellular 58.04 26.43
CDX84035 Canola nucleus 44.76 26.23
CDX96860 Canola nucleus 44.76 26.23
Os04t0594400-01 Rice plasma membrane 57.34 26.11
Zm00001d026206_P001 Maize cytosol, nucleus, plastid 57.34 26.11
TraesCS2D01G444000.1 Wheat extracellular 57.34 26.03
TraesCS2A01G445100.1 Wheat extracellular 57.34 25.87
CDY49093 Canola cytosol 44.06 25.71
TraesCS2B01G466100.1 Wheat extracellular 56.64 25.55
Zm00001d035920_P002 Maize extracellular, vacuole 61.54 25.43
CDY01872 Canola cytosol, plastid 50.35 25.35
CDY62016 Canola nucleus 41.26 25.21
CDX85485 Canola plastid 54.55 24.76
CDY16974 Canola plastid 54.55 24.53
CDY38176 Canola cytosol 44.06 23.95
Zm00001d046992_P001 Maize cytosol 53.85 23.55
CDY25131 Canola cytosol, mitochondrion, nucleus, plastid 43.36 23.31
TraesCS6D01G249000.1 Wheat nucleus, plastid 57.34 21.47
Os04t0624800-01 Rice nucleus 55.24 21.01
TraesCS6A01G265600.1 Wheat extracellular 58.04 20.91
OQU85574 Sorghum nucleus 56.64 20.72
TraesCS6B01G292900.1 Wheat endoplasmic reticulum, extracellular 56.64 20.4
Zm00001d051524_P002 Maize nucleus 55.24 19.6
Zm00001d026150_P001 Maize cytosol 32.17 19.17
Zm00001d031612_P001 Maize cytosol 32.17 19.17
CDY38083 Canola nucleus 53.85 18.38
Zm00001d014267_P001 Maize nucleus 53.85 18.25
CDX91958 Canola cytosol, nucleus, plastid 31.47 17.86
CDX74287 Canola cytosol 31.47 17.86
Zm00001d031493_P001 Maize cytosol, mitochondrion, plastid 37.76 16.62
Zm00001d046215_P001 Maize cytosol 31.47 14.06
Protein Annotations
EnsemblPlants:CDY01476EnsemblPlantsGene:GSBRNA2T00112482001GO:A0A078EK19GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:RBD_domain_sfPANTHER:PTHR44136PANTHER:PTHR44136:SF5ProteinID:CDY01476ProteinID:CDY01476.1SUPFAM:SSF54928
UniParc:UPI0004EDAF93MapMan:35.1::::
Description
BnaC07g34660D
Coordinates
chrLK031927:-:31588..32316
Molecular Weight (calculated)
15352.2 Da
IEP (calculated)
7.529
GRAVY (calculated)
-0.233
Length
143 amino acids
Sequence
(BLAST)
001: MTTVEVSNVS LGATDRDLKE FVSFSGGILY PETLSEAERS KLAYVTFKDL QGAETAVLLS EPKDSSKSPR AGDSVFRKAE DVVSSMLAKG FILGKDAIAK
101: AKSVDEKHQL TSTASARVAS LDKKFGFTDK INTGTVVVDD KVR
Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.