Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73855 | Canola | cytosol | 100.0 | 100.0 |
| Bra001418.1-P | Field mustard | cytosol, extracellular | 99.51 | 99.51 |
| AT3G11730.1 | Thale cress | cytosol | 97.57 | 98.05 |
| CDY47919 | Canola | vacuole | 94.66 | 94.66 |
| VIT_12s0035g01150.t01 | Wine grape | vacuole | 86.41 | 88.12 |
| Solyc01g103370.2.1 | Tomato | endoplasmic reticulum | 83.98 | 85.64 |
| PGSC0003DMT400064019 | Potato | cytosol, extracellular | 83.98 | 85.64 |
| KRH06045 | Soybean | cytosol | 82.52 | 84.58 |
| KRH26285 | Soybean | endoplasmic reticulum | 81.55 | 83.58 |
| GSMUA_Achr10P... | Banana | cytosol | 78.16 | 79.7 |
| Zm00001d003588_P002 | Maize | cytosol, extracellular | 56.31 | 77.85 |
| TraesCS1B01G019100.2 | Wheat | golgi | 76.21 | 76.59 |
| TraesCS1A01G015300.1 | Wheat | cytosol, extracellular | 76.21 | 76.59 |
| TraesCS1D01G013200.1 | Wheat | cytosol, extracellular | 75.73 | 76.47 |
| CDX90468 | Canola | cytosol | 74.27 | 75.74 |
| CDX76566 | Canola | cytosol | 73.79 | 75.25 |
| CDY65880 | Canola | cytosol | 73.79 | 75.25 |
| Zm00001d035741_P002 | Maize | cytosol | 74.76 | 75.12 |
| EES10859 | Sorghum | cytosol | 74.76 | 74.4 |
| CDX77748 | Canola | cytosol | 72.82 | 74.26 |
| CDY43436 | Canola | cytosol | 72.82 | 74.26 |
| CDY40564 | Canola | cytosol | 72.82 | 74.26 |
| CDY33521 | Canola | cytosol | 72.82 | 74.26 |
| CDY28967 | Canola | cytosol | 72.82 | 74.26 |
| EES18842 | Sorghum | cytosol | 73.79 | 74.15 |
| CDY67887 | Canola | cytosol | 72.82 | 73.89 |
| TraesCS2B01G327900.1 | Wheat | cytosol | 73.79 | 73.79 |
| TraesCS2A01G311000.3 | Wheat | cytosol | 73.79 | 71.36 |
| TraesCS2D01G309200.2 | Wheat | cytosol | 73.3 | 70.89 |
| CDY52557 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 72.33 | 69.95 |
| HORVU1Hr1G001910.9 | Barley | endoplasmic reticulum | 74.76 | 68.44 |
| CDY38404 | Canola | endoplasmic reticulum | 72.33 | 68.04 |
| GSMUA_Achr6P17450_001 | Banana | cytosol | 78.64 | 64.29 |
| CDX85225 | Canola | cytosol | 49.03 | 63.92 |
| CDY38055 | Canola | cytosol | 72.82 | 63.29 |
| Zm00001d005215_P001 | Maize | cytosol | 46.6 | 63.16 |
| CDY72056 | Canola | cytosol | 37.86 | 62.4 |
| CDY09621 | Canola | cytosol | 72.33 | 61.32 |
| CDX88725 | Canola | cytosol | 57.77 | 55.09 |
| CDX88726 | Canola | cytosol | 57.77 | 55.09 |
| CDY71506 | Canola | cytosol | 57.77 | 55.09 |
| CDX68365 | Canola | cytosol | 57.77 | 55.09 |
| CDY30926 | Canola | cytosol | 57.77 | 55.09 |
| CDY31592 | Canola | cytosol | 57.77 | 55.09 |
| CDX77855 | Canola | cytosol | 57.28 | 54.63 |
| CDX86045 | Canola | cytosol | 57.28 | 54.63 |
| Zm00001d003789_P002 | Maize | extracellular, plasma membrane | 68.93 | 53.79 |
| CDY09249 | Canola | cytosol | 55.83 | 53.24 |
| CDY54609 | Canola | cytosol | 56.31 | 53.21 |
| CDX80224 | Canola | cytosol | 54.85 | 53.05 |
| CDY11256 | Canola | cytosol | 55.83 | 53.0 |
| CDY41572 | Canola | cytosol | 55.34 | 52.29 |
| CDX80871 | Canola | cytosol | 55.83 | 51.57 |
| CDY34032 | Canola | cytosol | 35.92 | 50.34 |
| CDY70243 | Canola | cytosol | 35.92 | 48.68 |
| CDY50126 | Canola | cytosol | 47.09 | 46.19 |
| CDY58166 | Canola | cytosol | 47.09 | 46.19 |
| CDY35596 | Canola | cytosol | 47.09 | 45.97 |
| CDY42961 | Canola | cytosol | 47.09 | 45.97 |
| CDX75535 | Canola | cytosol | 47.09 | 45.97 |
| CDY09641 | Canola | cytosol | 47.09 | 45.97 |
| CDX69177 | Canola | cytosol | 47.09 | 45.97 |
| CDX94925 | Canola | cytosol | 35.92 | 45.12 |
| CDY47039 | Canola | plasma membrane | 45.63 | 44.55 |
| CDX72559 | Canola | cytosol | 45.63 | 44.55 |
| CDY07577 | Canola | cytosol | 56.8 | 43.82 |
| CDY52746 | Canola | cytosol | 56.8 | 43.49 |
| CDX99131 | Canola | cytosol | 57.28 | 38.31 |
Protein Annotations
| MapMan:22.8.1.4 | Gene3D:3.40.50.300 | GO:A0A078CAN8 | UniProt:A0A078CAN8 | EnsemblPlants:CDY56593 | ProteinID:CDY56593 |
| ProteinID:CDY56593.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00019774001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF666 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
| UniParc:UPI0004EE2780 | SEG:seg | : | : | : | : |
Description
BnaC03g73390DBnaA03g31920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CAN8]
Coordinates
chrLK033503:+:8824..11006
Molecular Weight (calculated)
22718.9 Da
IEP (calculated)
4.890
GRAVY (calculated)
-0.326
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NDSVCKLLIG NKNDMVESKV VSTETGKALA DELGIPFLET SAKDSTNVEQ AFLTIAGEIK KKMGSQTNAN KTSGSGTVQM KGQPIQQNNG
201: GGCCGQ
101: QWLSEIDRYA NDSVCKLLIG NKNDMVESKV VSTETGKALA DELGIPFLET SAKDSTNVEQ AFLTIAGEIK KKMGSQTNAN KTSGSGTVQM KGQPIQQNNG
201: GGCCGQ
001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ
Arabidopsis Description
RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.