Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37483 | Canola | plasma membrane | 97.8 | 97.8 |
| Bra021504.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 96.7 | 96.7 |
| CDY23634 | Canola | plasma membrane | 81.32 | 81.77 |
| CDX97509 | Canola | plasma membrane | 78.02 | 78.45 |
| AT3G13710.1 | Thale cress | plasma membrane | 69.23 | 67.02 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 62.64 | 60.96 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 62.09 | 60.43 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 57.69 | 57.69 |
| Solyc03g121460.1.1 | Tomato | plastid | 56.59 | 56.59 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 57.14 | 55.03 |
| CDY08228 | Canola | plasma membrane | 56.04 | 53.97 |
| KRH23330 | Soybean | plastid | 53.3 | 52.72 |
| KRH10001 | Soybean | mitochondrion | 53.3 | 52.72 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 53.3 | 51.6 |
| KRH44167 | Soybean | plasma membrane | 48.9 | 50.57 |
| KRH47141 | Soybean | plasma membrane | 49.45 | 50.56 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 49.45 | 46.63 |
| CDX81845 | Canola | plasma membrane | 45.05 | 45.3 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 47.25 | 44.56 |
| EES00126 | Sorghum | plastid | 46.7 | 44.27 |
| CDY26225 | Canola | plasma membrane | 44.51 | 44.02 |
| CDY59501 | Canola | plasma membrane | 43.41 | 42.93 |
| TraesCS3D01G106500.1 | Wheat | plastid | 43.96 | 42.11 |
| TraesCS3B01G122600.1 | Wheat | plastid | 43.96 | 42.11 |
| TraesCS3A01G104300.1 | Wheat | plastid | 43.41 | 41.36 |
| Os05t0200280-01 | Rice | plasma membrane | 43.41 | 40.93 |
| CDY55133 | Canola | plasma membrane | 47.8 | 40.85 |
| CDY51733 | Canola | plastid | 47.25 | 40.19 |
| TraesCS1B01G143000.1 | Wheat | plastid | 42.31 | 40.1 |
| Os01t0196500-01 | Rice | plastid | 43.96 | 39.8 |
| TraesCS1D01G130300.1 | Wheat | plastid | 41.76 | 39.79 |
| TraesCS1A01G124100.1 | Wheat | plastid | 41.76 | 39.79 |
| CDY37482 | Canola | plastid | 45.6 | 39.71 |
| CDY51734 | Canola | plastid | 43.41 | 37.8 |
| CDX95035 | Canola | plastid | 42.86 | 37.5 |
| CDX93539 | Canola | plastid | 42.86 | 37.5 |
| OQU77594 | Sorghum | plastid | 38.46 | 35.71 |
| HORVU1Hr1G028520.1 | Barley | plastid | 42.31 | 35.65 |
| Zm00001d037747_P001 | Maize | plastid | 36.26 | 35.11 |
| CDX72173 | Canola | plastid | 39.01 | 34.98 |
| CDY27245 | Canola | plastid | 39.01 | 34.98 |
| CDY05662 | Canola | plastid | 13.74 | 34.25 |
| CDY06788 | Canola | plastid | 36.26 | 34.02 |
| CDY31997 | Canola | plastid | 39.01 | 33.81 |
| CDX67633 | Canola | plastid | 38.46 | 33.18 |
| CDY43514 | Canola | mitochondrion | 31.87 | 33.14 |
| CDY41253 | Canola | plastid | 15.38 | 32.56 |
| CDY25186 | Canola | plastid | 15.38 | 32.56 |
| CDY63156 | Canola | plastid | 38.46 | 32.11 |
| CDX70153 | Canola | plastid | 37.91 | 32.09 |
| CDY18870 | Canola | plastid | 36.81 | 32.06 |
| CDY07736 | Canola | plastid | 39.01 | 31.98 |
| CDX74794 | Canola | plastid | 37.36 | 31.92 |
| HORVU3Hr1G018940.2 | Barley | plastid | 44.51 | 31.76 |
| CDX86646 | Canola | plasma membrane | 30.77 | 31.46 |
| CDY51077 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 31.87 | 31.35 |
| CDX80758 | Canola | plastid | 36.81 | 31.31 |
| CDY15494 | Canola | plasma membrane | 29.67 | 30.34 |
| CDY50022 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 30.77 | 30.11 |
| CDY61529 | Canola | plastid | 20.33 | 29.37 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 29.12 | 29.12 |
| CDY58876 | Canola | plastid | 33.52 | 27.98 |
| CDX81033 | Canola | plastid | 32.97 | 27.52 |
| CDY32804 | Canola | plastid | 28.02 | 27.13 |
| CDY17405 | Canola | plastid | 26.92 | 25.52 |
Protein Annotations
| EnsemblPlants:CDY51735 | EnsemblPlantsGene:GSBRNA2T00004097001 | GO:A0A078IL02 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF2 | PFAM:PF03208 | ProteinID:CDY51735 | ProteinID:CDY51735.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EED2FC | UniProt:A0A078IL02 | MapMan:22.8.4.3.2 | : |
Description
BnaA01g37180DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078IL02]
Coordinates
chrLK033023:-:32673..33558
Molecular Weight (calculated)
20672.5 Da
IEP (calculated)
7.161
GRAVY (calculated)
0.480
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNYGTIPTS SHGSPVMDPD SISRAKQRIK DGLAMSRPWR QMFDLHSMRL PHGVSEAYSR IKKNLSYFQT NYAIVVLVLI FFSLIKHPTS LVVLTVLVFV
101: WIFLYFFRDE PIKVFRYQID DHTVLVCLSV ITIVLLFLTD VTLNLVGALV TGAVLVLIHA VVRKTEDLFL DEEAATAEII QD
101: WIFLYFFRDE PIKVFRYQID DHTVLVCLSV ITIVLLFLTD VTLNLVGALV TGAVLVLIHA VVRKTEDLFL DEEAATAEII QD
001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
Arabidopsis Description
PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.