CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007216.1-P	Field mustard	plastid	100.0	100.0
CDX72173	Canola	plastid	99.01	99.01
CDY31997	Canola	plastid	93.1	90.0
AT3G56110.1	Thale cress	plastid	92.12	89.47
CDY05662	Canola	plastid	32.02	89.04
CDX67633	Canola	plastid	92.12	88.63
CDY25186	Canola	plastid	36.45	86.05
CDY41253	Canola	plastid	35.47	83.72
CDX74794	Canola	plastid	80.3	76.53
CDY18870	Canola	plastid	77.83	75.6
CDX70153	Canola	plastid	69.46	65.58
Solyc06g050570.1.1	Tomato	plastid	68.47	63.76
PGSC0003DMT400061546	Potato	plastid	67.98	63.3
KRH73238	Soybean	plastid	67.0	63.26
KRH14895	Soybean	plastid	66.01	62.33
KRH54835	Soybean	endoplasmic reticulum, extracellular, vacuole	33.0	62.04
CDY63156	Canola	plastid	60.59	56.42
CDY07736	Canola	plastid	61.08	55.86
CDX80758	Canola	plastid	56.16	53.27
CDX81033	Canola	plastid	53.69	50.0
CDY58876	Canola	plastid	53.69	50.0
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	39.9	44.51
CDY61529	Canola	plastid	27.59	44.44
CDY33064	Canola	cytosol, plasma membrane, plastid	36.45	39.57
CDY51735	Canola	plasma membrane	34.98	39.01
CDY23634	Canola	plasma membrane	34.48	38.67
CDY24050	Canola	cytosol, plasma membrane, plastid	35.47	38.5
CDY37483	Canola	plasma membrane	34.48	38.46
CDX97509	Canola	plasma membrane	33.99	38.12
CDY26125	Canola	cytosol, plasma membrane, plastid	33.99	36.51
CDY08228	Canola	plasma membrane	32.51	34.92
CDX81845	Canola	plasma membrane	28.08	31.49
CDY43514	Canola	mitochondrion	27.09	31.43
CDY26225	Canola	plasma membrane	27.59	30.43
CDY32804	Canola	plastid	28.08	30.32
CDY06788	Canola	plastid	28.57	29.9
CDY59501	Canola	plasma membrane	26.6	29.35
CDY15494	Canola	plasma membrane	25.62	29.21
CDX86646	Canola	plasma membrane	25.62	29.21
CDY17405	Canola	plastid	27.59	29.17
CDY50022	Canola	cytosol, endoplasmic reticulum, plasma membrane	26.6	29.03
CDY51077	Canola	cytosol, endoplasmic reticulum, plasma membrane	26.11	28.65
CDX93539	Canola	plastid	29.06	28.37
CDX95035	Canola	plastid	28.08	27.4
CDY55133	Canola	plasma membrane	24.63	23.47
CDY51734	Canola	plastid	23.65	22.97
CDY37482	Canola	plastid	23.65	22.97
CDY51733	Canola	plastid	23.65	22.43

Protein Annotations

EnsemblPlants:CDY27245	EnsemblPlantsGene:GSBRNA2T00037119001	GO:A0A078GKY6	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208	ProteinID:CDY27245	ProteinID:CDY27245.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002542B19	UniProt:A0A078GKY6	MapMan:22.8.4.3.2	:

Description

BnaA09g35570DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKY6]

Coordinates

chrLK032201:+:323820..324770

Molecular Weight (calculated)

21996.9 Da

IEP (calculated)

8.749

GRAVY (calculated)

0.497

Length

203 amino acids

Sequence
(BLAST)

001: MASPPTIPVT NQQAAQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWAEL VDRSSMARPE SLTDALSRIR KNLAYFKVNY AAIVSLVLAF SLFSHPLSLL
101: VLVGLLAGWM FLYVFRPADQ PLVVFGRTFS DRETLLGLAL CTIVVVFMTS VGSLLTSALM IGVAIVCLHG AFVVPDDLFM DDQEPANAGL LSFLGGSATS
201: GRV

Best Arabidopsis Sequence Match ( AT3G56110.4 )
(BLAST)

001: MATPPTLPVT NQQAVQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWTEL IDRSSMARPE SLTDALSRIR KNLAYFKVNY VAIVSLVLAF SLFSHPLSLL
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV

Arabidopsis Description

PRA1B1PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VNJ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.