Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08228 | Canola | plasma membrane | 93.12 | 93.12 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 82.54 | 83.42 |
| AT1G55190.1 | Thale cress | plasma membrane | 83.07 | 83.07 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 80.42 | 81.28 |
| CDY23634 | Canola | plasma membrane | 59.26 | 61.88 |
| CDX97509 | Canola | plasma membrane | 57.14 | 59.67 |
| Solyc03g121460.1.1 | Tomato | plastid | 56.08 | 58.24 |
| CDY37483 | Canola | plasma membrane | 55.56 | 57.69 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 55.56 | 57.69 |
| CDY51735 | Canola | plasma membrane | 55.03 | 57.14 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 56.08 | 54.92 |
| KRH10001 | Soybean | mitochondrion | 52.38 | 53.8 |
| KRH44167 | Soybean | plasma membrane | 49.74 | 53.41 |
| KRH47141 | Soybean | plasma membrane | 50.26 | 53.37 |
| KRH23330 | Soybean | plastid | 50.79 | 52.17 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 49.21 | 49.47 |
| CDX81845 | Canola | plasma membrane | 43.92 | 45.86 |
| CDY59501 | Canola | plasma membrane | 43.92 | 45.11 |
| CDY26225 | Canola | plasma membrane | 43.39 | 44.57 |
| Os05t0200280-01 | Rice | plasma membrane | 44.97 | 44.04 |
| TraesCS1D01G130300.1 | Wheat | plastid | 44.44 | 43.98 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 44.44 | 43.52 |
| TraesCS1A01G124100.1 | Wheat | plastid | 43.92 | 43.46 |
| TraesCS1B01G143000.1 | Wheat | plastid | 43.92 | 43.23 |
| EES00126 | Sorghum | plastid | 43.92 | 43.23 |
| Zm00001d037747_P001 | Maize | plastid | 42.86 | 43.09 |
| OQU77594 | Sorghum | plastid | 44.44 | 42.86 |
| TraesCS3D01G106500.1 | Wheat | plastid | 42.33 | 42.11 |
| TraesCS3B01G122600.1 | Wheat | plastid | 42.33 | 42.11 |
| TraesCS3A01G104300.1 | Wheat | plastid | 41.8 | 41.36 |
| Os01t0196500-01 | Rice | plastid | 43.92 | 41.29 |
| HORVU1Hr1G028520.1 | Barley | plastid | 44.44 | 38.89 |
| CDX93539 | Canola | plastid | 40.74 | 37.02 |
| CDX95035 | Canola | plastid | 39.68 | 36.06 |
| CDY43514 | Canola | mitochondrion | 31.75 | 34.29 |
| CDY55133 | Canola | plasma membrane | 38.62 | 34.27 |
| CDY51733 | Canola | plastid | 38.62 | 34.11 |
| CDY06788 | Canola | plastid | 34.92 | 34.02 |
| CDX72173 | Canola | plastid | 36.51 | 33.99 |
| CDY27245 | Canola | plastid | 36.51 | 33.99 |
| CDY37482 | Canola | plastid | 37.57 | 33.97 |
| CDX74794 | Canola | plastid | 37.57 | 33.33 |
| CDY41253 | Canola | plastid | 14.81 | 32.56 |
| CDY51734 | Canola | plastid | 35.98 | 32.54 |
| CDY18870 | Canola | plastid | 35.98 | 32.54 |
| CDY51077 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 31.75 | 32.43 |
| HORVU3Hr1G018940.2 | Barley | plastid | 43.39 | 32.16 |
| CDX86646 | Canola | plasma membrane | 30.16 | 32.02 |
| CDY31997 | Canola | plastid | 35.45 | 31.9 |
| CDY50022 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 31.22 | 31.72 |
| CDY15494 | Canola | plasma membrane | 29.63 | 31.46 |
| CDX67633 | Canola | plastid | 34.92 | 31.28 |
| CDY25186 | Canola | plastid | 13.76 | 30.23 |
| CDY05662 | Canola | plastid | 11.64 | 30.14 |
| CDX70153 | Canola | plastid | 33.86 | 29.77 |
| CDY32804 | Canola | plastid | 28.04 | 28.19 |
| CDX80758 | Canola | plastid | 31.75 | 28.04 |
| CDX81033 | Canola | plastid | 31.22 | 27.06 |
| CDY61529 | Canola | plastid | 17.99 | 26.98 |
| CDY58876 | Canola | plastid | 30.69 | 26.61 |
| CDY17405 | Canola | plastid | 26.98 | 26.56 |
| CDY07736 | Canola | plastid | 29.1 | 24.77 |
| CDY63156 | Canola | plastid | 28.04 | 24.31 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 22.22 | 23.08 |
Protein Annotations
| EnsemblPlants:CDY26125 | EnsemblPlantsGene:GSBRNA2T00034765001 | GO:A0A078GI50 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF2 | PFAM:PF03208 | ProteinID:CDY26125 | ProteinID:CDY26125.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EBE670 | UniProt:A0A078GI50 | MapMan:22.8.4.3.2 | : |
Description
BnaC06g10710DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078GI50]
Coordinates
chrLK032185:-:426155..426822
Molecular Weight (calculated)
21193.1 Da
IEP (calculated)
7.317
GRAVY (calculated)
0.522
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNYGAIPTS SHPSPPVDLE YISHVKHRLK AGLATRRPWR SMFDLESMTL PHGFFDAISR MKTNLVYFRA NYAIAVLFML FVSLLYHPTS LLVLAILVVF
101: WIFLYFLRDE PLVVFGHLVD DRTVMISLSV LTIVMLLFTH ATGNILGSLL TTVLLVLIHA AIRRSDNLYS DEEAAAATET SGLTSYPSS
101: WIFLYFLRDE PLVVFGHLVD DRTVMISLSV LTIVMLLFTH ATGNILGSLL TTVLLVLIHA AIRRSDNLYS DEEAAAATET SGLTSYPSS
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Arabidopsis Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.