CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY37482
CDY51733
CDY51734
CDY55133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	CDY37482	AT3G13720.1	21798944
AT5G10730.1	CDY51733	AT3G13720.1	21798944
AT5G10730.1	CDY51734	AT3G13720.1	21798944
AT5G10730.1	CDY55133	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69807	Canola	mitochondrion	98.61	98.61
AT5G10730.1	Thale cress	mitochondrion	93.06	93.38
CDY40113	Canola	mitochondrion	92.71	92.39
CDY67689	Canola	mitochondrion	92.36	91.72
KRG88578	Soybean	cytosol	30.21	82.08
Solyc08g006510.2.1	Tomato	plastid, unclear	76.74	78.37
KRH61625	Soybean	mitochondrion	77.43	77.7
KRG88574	Soybean	cytosol	20.83	74.07
VIT_04s0008g07400.t01	Wine grape	cytosol	75.0	72.97
KRH52293	Soybean	cytosol	31.6	68.94
KRG88571	Soybean	extracellular	12.5	65.45
KRG88572	Soybean	cytosol, extracellular	26.04	63.03
CDX85525	Canola	mitochondrion, plastid	52.43	55.72
CDX90965	Canola	mitochondrion	51.74	54.98
KRH52291	Soybean	mitochondrion	48.96	54.65
KRG88575	Soybean	mitochondrion	17.36	54.35
CDX97051	Canola	cytosol, extracellular, plastid	18.4	50.0
CDY64420	Canola	plastid	34.38	34.14
CDY12254	Canola	plastid	34.38	34.02

Protein Annotations

EnsemblPlants:CDX97050	EnsemblPlantsGene:GSBRNA2T00104018001	Gene3D:3.40.50.720	GO:A0A078E4U1	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR12126	PANTHER:PTHR12126:SF8	PFAM:PF13460	ProteinID:CDX97050	ProteinID:CDX97050.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0004EEC599	MapMan:35.1	:	:	:

Description

BnaC09g45750D

Coordinates

chrLK031897:-:370024..371727

Molecular Weight (calculated)

31117.5 Da

IEP (calculated)

10.069

GRAVY (calculated)

-0.094

Length

288 amino acids

Sequence
(BLAST)

001: MRTIVSRLIR HKSSVPQTRF VSASSTGGRY LTTDSNKIDE PFNVEEAETV HVPPPPTEKL LVLGGNGFVG SHVCKEALDR GLSVSSLSRS GRSSLQEPWA
101: SRVTWHQGNL LSSDLLKDAL DGVTSVISCV GGFGSNSYMY KINGTANINA IRAASEKGVK RFVYISAADF GLAKYLLSGY YEGKRAAETE LLTRFAYGGI
201: ILRPGFIYGT RSVGNMKIPL GVFGSPMEMV LQQAKPLNQL PLVGPLFTPP VNVESVAKVA VRAATDPVFP PGIVDVHGIQ RYSQQKSR

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.