CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10001
KRH23330
KRH44167
KRH47141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10730.1	KRH10001	AT3G13720.1	21798944
AT5G10730.1	KRH23330	AT3G13720.1	21798944
AT5G10730.1	KRH44167	AT3G13720.1	21798944
AT5G10730.1	KRH47141	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88571	Soybean	extracellular	18.99	89.09
KRG88572	Soybean	cytosol, extracellular	40.31	87.39
KRG88574	Soybean	cytosol	26.36	83.95
KRH52293	Soybean	cytosol	42.64	83.33
KRG88578	Soybean	cytosol	27.52	66.98
KRH61625	Soybean	mitochondrion	67.05	60.28
AT5G10730.1	Thale cress	mitochondrion	57.75	51.92
Solyc08g006510.2.1	Tomato	plastid, unclear	55.43	50.71
CDY40113	Canola	mitochondrion	56.2	50.17
GSMUA_Achr1P19070_001	Banana	plastid	55.04	49.82
CDY67689	Canola	mitochondrion	55.81	49.66
Bra028572.1-P	Field mustard	mitochondrion	55.43	49.48
CDX97050	Canola	mitochondrion	54.65	48.96
Bra009010.1-P	Field mustard	mitochondrion	53.88	48.26
CDX69807	Canola	mitochondrion	53.88	48.26
Zm00001d040954_P001	Maize	cytosol	20.93	48.21
KRG88575	Soybean	mitochondrion	17.05	47.83
VIT_04s0008g07400.t01	Wine grape	cytosol	53.88	46.96
HORVU5Hr1G073450.4	Barley	mitochondrion	52.71	46.26
TraesCS5A01G165800.1	Wheat	golgi	52.71	46.26
TraesCS5B01G162400.1	Wheat	mitochondrion	52.33	45.92
Os02t0556100-01	Rice	mitochondrion	49.61	43.84
Zm00001d040953_P001	Maize	mitochondrion, plastid	27.52	37.17
EES00762	Sorghum	mitochondrion, plastid	47.67	30.22
KRH74352	Soybean	plastid	29.84	25.41
KRH39581	Soybean	mitochondrion, plastid	29.46	25.08

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	UniProt:A0A0R0JI14	EMBL:ACUP02003417	EnsemblPlantsGene:GLYMA_06G059200	GO:GO:0003674
GO:GO:0003824	GO:GO:0003954	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0055114	GO:GO:1901006	EnsemblPlants:KRH52291	ProteinID:KRH52291	ProteinID:KRH52291.1	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF13460	PANTHER:PTHR12126	PANTHER:PTHR12126:SF1	SUPFAM:SSF51735	UniParc:UPI0006ED5093
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:4482111..4487968

Molecular Weight (calculated)

27903.8 Da

IEP (calculated)

10.226

GRAVY (calculated)

0.118

Length

258 amino acids

Sequence
(BLAST)

001: MRTVLSRLIH STPSISRINA VSIRGRDLFF PNVCFKVEEA VNVPPPPTEK VVLFGGDWFV GSHFFREALE RGMSAGSPSR DDGRSSLHDS WARNFAWYQG
101: NLFSTATLRK HLNGATAVIS FMGGFGSNIK AIRAASDQGV KRFVYISAAE CGVVNDLLQG CNIGKRAAET ELLNRFPFGG VILRPGLIYE TRIAAVPLEM
201: VLRVAKQSNH IPLVGPPLTP PVSVTAVAKV AVTAATATDP VFPPGIIDAY GIRRLLSE

Best Arabidopsis Sequence Match ( AT5G10730.1 )
(BLAST)

001: MRTIVSRLIR YQSSLSQIRF VSASGGGRYL STDSNKIDEP FNVEEAETVH VPPPPTEKLL VLGGNGFVGS HVCKEALDRG LSVSSLSRSG RSSLQESWAS
101: RVTWHQGNLL SSDLLKDALE GVTSVISCVG GFGSNSYMYK INGTANINAI RAASEKGVKR FVYISAADFG LANYLLRGYY EGKRAAETEL LTRFAYGGII
201: LRPGFIYGTR SVGSMKIPLG VFGSPMEMVL QQAKPLNQLP LVGPLFTPPV NVESVAKVAV RAATDPVFPP GIVDVHGIQR YSQQKSR

Arabidopsis Description

AT5g10730/MAJ23_90 [Source:UniProtKB/TrEMBL;Acc:Q93VH5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.