CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

plastid 2
endoplasmic reticulum 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, endoplasmic reticulum, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX89063
CDY08228
CDY24050
CDY26125
CDY33064
CDY37482
CDY41153
CDY48365
CDY51733
CDY51734
CDY55133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34690.1	CDY08228	AT1G55190.1	18845362
AT2G34690.1	CDY24050	AT1G55190.1	18845362
AT2G34690.1	CDY26125	AT1G55190.1	18845362
AT2G34690.1	CDY33064	AT1G55190.1	18845362
AT2G34690.1	CDY37482	AT3G13720.1	18845362
AT2G34690.1	CDY51733	AT3G13720.1	18845362
AT2G34690.1	CDY51734	AT3G13720.1	18845362
AT2G34690.1	CDY55133	AT3G13720.1	18845362
AT2G34690.1	CDX67837	AT3G60600.1	18845362
AT2G34690.1	CDX71796	AT3G60600.1	18845362
AT2G34690.1	CDX89063	AT3G60600.1	18845362
AT2G34690.1	CDY41153	AT3G60600.1	18845362
AT2G34690.1	CDY48365	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022985.1-P	Field mustard	cytosol	70.87	98.65
CDX79572	Canola	cytosol	92.23	92.23
AT2G34690.1	Thale cress	cytosol	80.58	80.58
CDX84289	Canola	cytosol	35.92	71.15
GSMUA_Achr5P02430_001	Banana	endoplasmic reticulum, extracellular	59.22	69.71
KRH11758	Soybean	cytosol	66.99	66.35
VIT_10s0003g04580.t01	Wine grape	cytosol	66.02	66.34
KRH36758	Soybean	cytosol	66.02	66.02
Solyc02g070250.2.1	Tomato	cytosol	66.99	65.71
PGSC0003DMT400054370	Potato	cytosol	66.99	65.71
EER90780	Sorghum	cytosol	63.11	63.11
TraesCS5A01G423200.1	Wheat	cytosol	60.68	60.68
Os03t0784900-01	Rice	cytosol	60.68	60.39
CDY43977	Canola	cytosol	36.89	60.32
CDX87716	Canola	cytosol	36.89	60.32
TraesCS5D01G431800.1	Wheat	cytosol	60.68	60.1
CDY43980	Canola	cytosol	51.46	52.74
TraesCS5B01G425200.1	Wheat	cytosol	60.68	50.4
Zm00001d034346_P002	Maize	mitochondrion	63.11	50.39
CDX87706	Canola	cytosol	20.87	49.43
VIT_11s0052g00280.t01	Wine grape	cytosol	47.09	46.86
VIT_11s0052g00260.t01	Wine grape	cytosol, plastid	46.6	46.6
CDX96005	Canola	cytosol	18.93	44.83
HORVU5Hr1G103320.2	Barley	nucleus, plastid	59.22	42.07
CDX87707	Canola	cytosol	27.18	40.88
CDY38602	Canola	cytosol	43.2	39.56
CDX90348	Canola	cytosol	41.75	38.05
CDY63450	Canola	cytosol	41.26	37.61
VIT_11s0052g00220.t01	Wine grape	cytosol	25.73	37.32
VIT_11s0052g00230.t01	Wine grape	cytosol	38.84	34.78
CDX96006	Canola	cytosol	16.99	26.32
VIT_11s0052g00240.t01	Wine grape	cytosol	37.86	19.95

Protein Annotations

Gene3D:1.10.3520.10	MapMan:5.4.6	GO:A0A078D6C2	EnsemblPlants:CDX84635	ProteinID:CDX84635	ProteinID:CDX84635.1
InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0120009
GO:GO:0120013	EnsemblPlantsGene:GSBRNA2T00141906001	InterPro:Glycolipid_transfer_prot_dom	InterPro:IPR036497	PFAM:PF08718	PANTHER:PTHR10219
PANTHER:PTHR10219:SF28	SUPFAM:SSF110004	UniParc:UPI0004EF399F	:	:	:

Description

BnaA03g15950D

Coordinates

chrLK031838:-:491454..493059

Molecular Weight (calculated)

22574.2 Da

IEP (calculated)

7.505

GRAVY (calculated)

0.022

Length

206 amino acids

Sequence
(BLAST)

001: MADSNAERPL RKISTAFKEL AATVSSPSPE VSVAQFSHAC SLVSPLFGCL GIAFKFAQMD YVAKVEDLAK ASSSVSTLVV MMERDIEANC VRKAGSHTRN
101: LLRVKRGLDM VKALFEEIIA SEGNNSLKDP ASKSYDQVFR PHHGWVIQKA VALGMCALPT RSQLLTVLNE EEAEAKIHMQ SYVNASAPVI AYLDNLFLSR
201: QLGIDW

Best Arabidopsis Sequence Match ( AT2G34690.1 )
(BLAST)

001: MADSEADKPL RKISAAFKKL AIIVNSPNPE VPVTQFSHAC SLVSPLFGCL GIAFKFAEMD YVAKVDDLVR ASSSISTLVV MMDKDIEADC VRKAGSHTRN
101: LLRVKRGLDM VKVLFEQIIA SEGDNSLKDP ATKSYAQVFA PHHGWAIRKA VSLGMYALPT RAHLLNMLKE DEAAAKIHMQ SYVNSSAPLI TYLDNLFLSK
201: QLGIDW

Arabidopsis Description

ACD11Accelerated cell death 11 [Source:UniProtKB/Swiss-Prot;Acc:O64587]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.