Factsheet for VIT_11s0052g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g02400.t01
VIT_15s0048g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34690.1	VIT_09s0002g02400.t01	AT1G55190.1	18845362
AT2G34690.1	VIT_09s0002g02400.t01	AT3G13720.1	18845362
AT2G34690.1	VIT_15s0048g00220.t01	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g00230.t01	Wine grape	cytosol	70.42	43.48
VIT_11s0052g00280.t01	Wine grape	cytosol	51.41	35.27
VIT_11s0052g00260.t01	Wine grape	cytosol, plastid	46.48	32.04
GSMUA_Achr5P02430_001	Banana	endoplasmic reticulum, extracellular	38.03	30.86
VIT_11s0052g00240.t01	Wine grape	cytosol	81.69	29.67
VIT_01s0011g03390.t01	Wine grape	cytosol	42.25	28.3
Solyc02g070250.2.1	Tomato	cytosol	41.55	28.1
Bra022985.1-P	Field mustard	cytosol	28.87	27.7
PGSC0003DMT400054370	Potato	cytosol	40.85	27.62
VIT_10s0003g04580.t01	Wine grape	cytosol	38.73	26.83
AT2G34690.1	Thale cress	cytosol	38.73	26.7
CDX79572	Canola	cytosol	38.73	26.7
KRH11758	Soybean	cytosol	38.73	26.44
KRH36758	Soybean	cytosol	38.03	26.21
CDX84635	Canola	cytosol, endoplasmic reticulum, peroxisome	37.32	25.73
TraesCS5A01G423200.1	Wheat	cytosol	37.32	25.73
TraesCS5D01G431800.1	Wheat	cytosol	37.32	25.48
EER90780	Sorghum	cytosol	36.62	25.24
CDX84289	Canola	cytosol	18.31	25.0
Os03t0784900-01	Rice	cytosol	34.51	23.67
CDX87707	Canola	cytosol	22.54	23.36
CDY43980	Canola	cytosol	31.69	22.39
Bra022041.1-P	Field mustard	cytosol	31.69	22.39
Bra022038.1-P	Field mustard	cytosol	29.58	21.32
TraesCS5B01G425200.1	Wheat	cytosol	36.62	20.97
Zm00001d034346_P002	Maize	mitochondrion	37.32	20.54
CDY43977	Canola	cytosol	16.9	19.05
CDX87716	Canola	cytosol	16.9	19.05
HORVU5Hr1G103320.2	Barley	nucleus, plastid	36.62	17.93
CDX87706	Canola	cytosol	10.56	17.24

Protein Annotations

Gene3D:1.10.3520.10	MapMan:5.4.6	ProteinID:CCB44681	ProteinID:CCB44681.1	UniProt:F6GXJ5	EMBL:FN594964
InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0120009
GO:GO:0120013	InterPro:Glycolipid_transfer_prot_dom	InterPro:IPR036497	PFAM:PF08718	PANTHER:PTHR10219	PANTHER:PTHR10219:SF43
SUPFAM:SSF110004	UniParc:UPI00021091F8	ArrayExpress:VIT_11s0052g00220	EnsemblPlantsGene:VIT_11s0052g00220	EnsemblPlants:VIT_11s0052g00220.t01	RefSeq:XP_002263254
RefSeq:XP_002263254.1	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:17386664..17393388

Molecular Weight (calculated)

15727.2 Da

IEP (calculated)

10.196

GRAVY (calculated)

0.006

Length

142 amino acids

Sequence
(BLAST)

001: MGFEDLCRSI TLVQGCRVGS TFVGYLGLPF KFAQLEFLSK VNDLNKGARA DDTLETLIDR EIEQNLAKKH YSSSRSLIRV KRSTIMLSVM FEQMVTRGGN
101: SIVGAVSKSY EKPFAAYHGW ATRTAVFASL PALPTRAKLM VA

Best Arabidopsis Sequence Match ( AT2G33470.2 )
(BLAST)

001: MEGTVFTPCL EGMKHVKSDQ GEMLTKPFLE LCKTILPVID KFGAAMTLVK SDIGGNITRL EKNYLSDPDK FKYLYTFVQV EIESKIAKGS SSCTNGLLWL
101: TRAMDFLVEL FRNLVAHQDW SMPQACADSY QKTLKKWHGW LASSTFSMAL KLAPDRKKFM DVISGSGNIQ ADMERFCAEF GPFLHDNHKF LASVGMDDMK
201: AS

Arabidopsis Description

GLTP1Glycolipid transfer protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O22797]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.