Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0002g02400.t01 | |
| VIT_15s0048g00220.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G34690.1 | VIT_09s0002g02400.t01 | AT1G55190.1 | 18845362 |
| AT2G34690.1 | VIT_09s0002g02400.t01 | AT3G13720.1 | 18845362 |
| AT2G34690.1 | VIT_15s0048g00220.t01 | AT3G60600.1 | 18845362 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0052g00220.t01 | Wine grape | cytosol | 29.67 | 81.69 |
| VIT_11s0052g00230.t01 | Wine grape | cytosol | 42.97 | 73.04 |
| VIT_11s0052g00280.t01 | Wine grape | cytosol | 28.13 | 53.14 |
| VIT_11s0052g00260.t01 | Wine grape | cytosol, plastid | 24.55 | 46.6 |
| GSMUA_Achr5P02430_001 | Banana | endoplasmic reticulum, extracellular | 19.44 | 43.43 |
| Solyc02g070250.2.1 | Tomato | cytosol | 21.74 | 40.48 |
| PGSC0003DMT400054370 | Potato | cytosol | 21.74 | 40.48 |
| CDX84289 | Canola | cytosol | 10.74 | 40.38 |
| AT2G34690.1 | Thale cress | cytosol | 20.97 | 39.81 |
| EER90780 | Sorghum | cytosol | 20.97 | 39.81 |
| KRH11758 | Soybean | cytosol | 20.97 | 39.42 |
| TraesCS5A01G423200.1 | Wheat | cytosol | 20.72 | 39.32 |
| KRH36758 | Soybean | cytosol | 20.72 | 39.32 |
| TraesCS5D01G431800.1 | Wheat | cytosol | 20.72 | 38.94 |
| VIT_10s0003g04580.t01 | Wine grape | cytosol | 20.2 | 38.54 |
| Bra022985.1-P | Field mustard | cytosol | 14.58 | 38.51 |
| CDX84635 | Canola | cytosol, endoplasmic reticulum, peroxisome | 19.95 | 37.86 |
| CDX79572 | Canola | cytosol | 19.69 | 37.38 |
| Os03t0784900-01 | Rice | cytosol | 19.18 | 36.23 |
| VIT_01s0011g03390.t01 | Wine grape | cytosol | 17.9 | 33.02 |
| Zm00001d034346_P002 | Maize | mitochondrion | 21.74 | 32.95 |
| TraesCS5B01G425200.1 | Wheat | cytosol | 20.46 | 32.26 |
| CDX87706 | Canola | cytosol | 7.16 | 32.18 |
| HORVU5Hr1G103320.2 | Barley | nucleus, plastid | 23.79 | 32.07 |
| CDY43980 | Canola | cytosol | 16.37 | 31.84 |
| Bra022041.1-P | Field mustard | cytosol | 16.37 | 31.84 |
| Bra022038.1-P | Field mustard | cytosol | 15.86 | 31.47 |
| CDY43977 | Canola | cytosol | 9.46 | 29.37 |
| CDX87716 | Canola | cytosol | 9.46 | 29.37 |
| CDX87707 | Canola | cytosol | 10.23 | 29.2 |
Protein Annotations
| Gene3D:1.10.3520.10 | EntrezGene:100259901 | wikigene:100259901 | EntrezGene:100265083 | wikigene:100265083 | MapMan:5.4.6 |
| EMBL:AM444284 | ProteinID:CAN74083 | ProteinID:CAN74083.1 | ProteinID:CCB44680 | ProteinID:CCB44680.1 | UniProt:F6GXJ4 |
| EMBL:FN594964 | InterPro:GLTP_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0120009 | GO:GO:0120013 | InterPro:Glycolipid_transfer_prot_dom | InterPro:IPR036497 | EntrezGene:LOC100259901 | wikigene:LOC100259901 |
| EntrezGene:LOC100265083 | wikigene:LOC100265083 | PFAM:PF08718 | PANTHER:PTHR10219 | PANTHER:PTHR10219:SF43 | SUPFAM:SSF110004 |
| UniParc:UPI00021091F7 | ArrayExpress:VIT_11s0052g00240 | EnsemblPlantsGene:VIT_11s0052g00240 | EnsemblPlants:VIT_11s0052g00240.t01 | RefSeq:XP_002262916 | RefSeq:XP_002262916.1 |
| RefSeq:XP_002262946 | RefSeq:XP_002262946.1 | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:17410515..17415382
Molecular Weight (calculated)
44315.1 Da
IEP (calculated)
10.085
GRAVY (calculated)
-0.216
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKREKLLT RMTDFIKEVA DCVNSPNPSV EVHRLVRYCR IGSTFVGYLG LPFKFAQMEF LSKVNDLDKG ARPDDTLETL IDREIQQNLA KKPYSGSRSL
101: IRVKRSIVML TVMFEQMLTK GGNSIVDAVS KSYEKSFAAY HGWATRTAVL ASLPALPTRA KLMKKLHENV NYIDSLFHSR ELGQQLKREK LLTRMADCIK
201: EVADCVNSPN PSLEVHRLVH YCRIGSTFVG YLGLPFKFAQ MEFLSKVNDL DKGARPDDTL ETLIDREIQQ NLAKKHYSSS RSLIRVKRSI VMLTVMFEQM
301: LTKGGNSIVG AVSKSYEKSF AAYHGWATRT AVFASLPALP TRAKLMKKLH ENEVSMTAKM KSFVDSSAVI VNYIDSLFHS RELGQQLLEL I
101: IRVKRSIVML TVMFEQMLTK GGNSIVDAVS KSYEKSFAAY HGWATRTAVL ASLPALPTRA KLMKKLHENV NYIDSLFHSR ELGQQLKREK LLTRMADCIK
201: EVADCVNSPN PSLEVHRLVH YCRIGSTFVG YLGLPFKFAQ MEFLSKVNDL DKGARPDDTL ETLIDREIQQ NLAKKHYSSS RSLIRVKRSI VMLTVMFEQM
301: LTKGGNSIVG AVSKSYEKSF AAYHGWATRT AVFASLPALP TRAKLMKKLH ENEVSMTAKM KSFVDSSAVI VNYIDSLFHS RELGQQLLEL I
001: MKRKRCEMEE TTKKKKMTEI GSAIEELSVL SIAKTTIVTT EKEAINIINL PLKPLLSFCN IIVQVLDKIG PTMAVLRHDI DQNIQRLEKM WESDPLVYSN
101: LVEILRKEAK EGSSRKPKSC SRAALWLTRA MDFTLALLQR LVKDMSQNME QAIEECYNLT IKPWHGWISS AAFKVALKLV PNNNTFINVL AAKDETHQMV
201: QDDITSLISL LIPLLSQLHS ILELYEVSKL KSP
101: LVEILRKEAK EGSSRKPKSC SRAALWLTRA MDFTLALLQR LVKDMSQNME QAIEECYNLT IKPWHGWISS AAFKVALKLV PNNNTFINVL AAKDETHQMV
201: QDDITSLISL LIPLLSQLHS ILELYEVSKL KSP
Arabidopsis Description
GLTP3Glycolipid transfer protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.