Factsheet for TraesCS5B01G425200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS2A01G368500.1
TraesCS2B01G385700.2
TraesCS2D01G365300.2
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6D01G220300.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34690.1	TraesCS1A01G124100.1	AT1G55190.1	18845362
AT2G34690.1	TraesCS1B01G143000.1	AT1G55190.1	18845362
AT2G34690.1	TraesCS1D01G130300.1	AT1G55190.1	18845362
AT2G34690.1	TraesCS3A01G104300.1	AT1G55190.1	18845362
AT2G34690.1	TraesCS3B01G122600.1	AT1G55190.1	18845362
AT2G34690.1	TraesCS3D01G106500.1	AT1G55190.1	18845362
AT2G34690.1	TraesCS1A01G124100.1	AT3G13720.1	18845362
AT2G34690.1	TraesCS1B01G143000.1	AT3G13720.1	18845362
AT2G34690.1	TraesCS1D01G130300.1	AT3G13720.1	18845362
AT2G34690.1	TraesCS3A01G104300.1	AT3G13720.1	18845362
AT2G34690.1	TraesCS3B01G122600.1	AT3G13720.1	18845362
AT2G34690.1	TraesCS3D01G106500.1	AT3G13720.1	18845362
AT2G34690.1	TraesCS2A01G368500.1	AT3G60600.1	18845362
AT2G34690.1	TraesCS2B01G385700.2	AT3G60600.1	18845362
AT2G34690.1	TraesCS2D01G365300.2	AT3G60600.1	18845362
AT2G34690.1	TraesCS6A01G237600.1	AT3G60600.1	18845362
AT2G34690.1	TraesCS6B01G266100.1	AT3G60600.1	18845362
AT2G34690.1	TraesCS6D01G220300.1	AT3G60600.1	18845362
AT2G34690.1	TraesCS7A01G300700.1	AT3G60600.1	18845362
AT2G34690.1	TraesCS7D01G296400.1	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G423200.1	Wheat	cytosol	82.66	99.51
TraesCS5D01G431800.1	Wheat	cytosol	82.66	98.56
Os03t0784900-01	Rice	cytosol	72.58	86.96
EER90780	Sorghum	cytosol	71.37	85.92
GSMUA_Achr5P02430_001	Banana	endoplasmic reticulum, extracellular	53.63	76.0
HORVU5Hr1G103320.2	Barley	nucleus, plastid	80.65	68.97
Zm00001d034346_P002	Maize	mitochondrion	70.97	68.22
KRH11758	Soybean	cytosol	55.65	66.35
AT2G34690.1	Thale cress	cytosol	54.44	65.53
KRH36758	Soybean	cytosol	54.03	65.05
Bra022985.1-P	Field mustard	cytosol	38.31	64.19
CDX79572	Canola	cytosol	52.42	63.11
Solyc02g070250.2.1	Tomato	cytosol	53.23	62.86
PGSC0003DMT400054370	Potato	cytosol	52.82	62.38
CDX84635	Canola	cytosol, endoplasmic reticulum, peroxisome	50.4	60.68
VIT_10s0003g04580.t01	Wine grape	cytosol	48.79	59.02
CDX84289	Canola	cytosol	23.79	56.73
CDX87716	Canola	cytosol	27.82	54.76
CDY43977	Canola	cytosol	27.82	54.76
Bra022038.1-P	Field mustard	cytosol	40.73	51.27
VIT_11s0052g00280.t01	Wine grape	cytosol	39.52	47.34
CDX87706	Canola	cytosol	16.13	45.98
CDY43980	Canola	cytosol	37.1	45.77
Bra022041.1-P	Field mustard	cytosol	37.1	45.77
VIT_11s0052g00260.t01	Wine grape	cytosol, plastid	36.69	44.17
TraesCS4B01G045400.1	Wheat	cytosol	39.11	42.54
VIT_11s0052g00220.t01	Wine grape	cytosol	20.97	36.62
CDX87707	Canola	cytosol	19.76	35.77
VIT_11s0052g00230.t01	Wine grape	cytosol	30.65	33.04
VIT_11s0052g00240.t01	Wine grape	cytosol	32.26	20.46

Protein Annotations

Gene3D:1.10.3520.10	MapMan:5.4.6	InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150
GO:GO:0008219	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009751	GO:GO:0009816
GO:GO:0009987	GO:GO:0010175	GO:GO:0016043	GO:GO:0120009	GO:GO:0120013	InterPro:Glycolipid_transfer_prot_dom
InterPro:IPR036497	PFAM:PF08718	PANTHER:PTHR10219	PANTHER:PTHR10219:SF28	SUPFAM:SSF110004	EnsemblPlantsGene:TraesCS5B01G425200
EnsemblPlants:TraesCS5B01G425200.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:601328185..601330221

Molecular Weight (calculated)

26649.2 Da

IEP (calculated)

9.668

GRAVY (calculated)

-0.046

Length

248 amino acids

Sequence
(BLAST)

001: MGSNEADKPL RRIGASFEQL AAVAKQQQQQ PAMAAGDFSR ACSNVSVLFG CLGIAFKFAE MDYVAKASAR SSAPLSSPPR YLLCSSSRLA IPPPVGALGC
101: LGRVGCSVDD LLEASKTIST LPSMVELDIQ KGTVRQAGSH TRNLLRVKRG IDMVKVLFEQ ILVTEGNSLK DAASKAYAQV FAPHHGWAIR KAVGAGMYAL
201: PSKSQLLKKL NEDENSARAQ MQSFVRSSGP VILYVEDLFT SKNLGLDW

Best Arabidopsis Sequence Match ( AT2G34690.1 )
(BLAST)

001: MADSEADKPL RKISAAFKKL AIIVNSPNPE VPVTQFSHAC SLVSPLFGCL GIAFKFAEMD YVAKVDDLVR ASSSISTLVV MMDKDIEADC VRKAGSHTRN
101: LLRVKRGLDM VKVLFEQIIA SEGDNSLKDP ATKSYAQVFA PHHGWAIRKA VSLGMYALPT RAHLLNMLKE DEAAAKIHMQ SYVNSSAPLI TYLDNLFLSK
201: QLGIDW

Arabidopsis Description

ACD11Accelerated cell death 11 [Source:UniProtKB/Swiss-Prot;Acc:O64587]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.