Factsheet for GSMUA_Achr5P02430_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

nucleus 2
extracellular 4
golgi 3
plasma membrane 3
endoplasmic reticulum 4
vacuole 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr5P20880_001
GSMUA_Achr7P09070_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34690.1	GSMUA_Achr7P09070_001	AT1G55190.1	18845362
AT2G34690.1	GSMUA_Achr7P09070_001	AT3G13720.1	18845362
AT2G34690.1	GSMUA_Achr11P...	AT3G60600.1	18845362
AT2G34690.1	GSMUA_Achr11P...	AT3G60600.1	18845362
AT2G34690.1	GSMUA_Achr1P20280_001	AT3G60600.1	18845362
AT2G34690.1	GSMUA_Achr5P20880_001	AT3G60600.1	18845362
AT2G34690.1	GSMUA_Achr8P11120_001	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022985.1-P	Field mustard	cytosol	57.71	68.24
Os03t0784900-01	Rice	cytosol	78.86	66.67
EER90780	Sorghum	cytosol	77.71	66.02
TraesCS5A01G423200.1	Wheat	cytosol	76.0	64.56
KRH11758	Soybean	cytosol	76.57	64.42
TraesCS5D01G431800.1	Wheat	cytosol	76.0	63.94
VIT_10s0003g04580.t01	Wine grape	cytosol	74.86	63.9
KRH36758	Soybean	cytosol	72.57	61.65
CDX84289	Canola	cytosol	36.57	61.54
CDX79572	Canola	cytosol	71.43	60.68
AT2G34690.1	Thale cress	cytosol	70.29	59.71
CDX84635	Canola	cytosol, endoplasmic reticulum, peroxisome	69.71	59.22
PGSC0003DMT400054370	Potato	cytosol	70.29	58.57
Solyc02g070250.2.1	Tomato	cytosol	69.71	58.1
TraesCS5B01G425200.1	Wheat	cytosol	76.0	53.63
Zm00001d034346_P002	Maize	mitochondrion	77.14	52.33
CDY43977	Canola	cytosol	33.14	46.03
CDX87716	Canola	cytosol	33.14	46.03
CDX87706	Canola	cytosol	22.86	45.98
VIT_11s0052g00260.t01	Wine grape	cytosol, plastid	53.14	45.15
HORVU5Hr1G103320.2	Barley	nucleus, plastid	74.29	44.83
VIT_11s0052g00280.t01	Wine grape	cytosol	52.57	44.44
GSMUA_Achr9P28440_001	Banana	cytosol	54.29	44.19
Bra022038.1-P	Field mustard	cytosol	49.71	44.16
CDY43980	Canola	cytosol	48.57	42.29
Bra022041.1-P	Field mustard	cytosol	48.57	42.29
VIT_11s0052g00220.t01	Wine grape	cytosol	30.86	38.03
CDX87707	Canola	cytosol	25.71	32.85
VIT_11s0052g00230.t01	Wine grape	cytosol	38.86	29.57
VIT_11s0052g00240.t01	Wine grape	cytosol	43.43	19.44

Protein Annotations

Gene3D:1.10.3520.10	MapMan:5.4.6	InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150
GO:GO:0008219	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009751	GO:GO:0009816
GO:GO:0009987	GO:GO:0010175	GO:GO:0015695	GO:GO:0015791	GO:GO:0016043	GO:GO:0072488
GO:GO:0120009	GO:GO:0120013	EnsemblPlantsGene:GSMUA_Achr5G02430_001	EnsemblPlants:GSMUA_Achr5P02430_001	EnsemblPlants:GSMUA_Achr5T02430_001	InterPro:Glycolipid_transfer_prot_dom
InterPro:IPR036497	UniProt:M0SV22	PFAM:PF08718	PANTHER:PTHR10219	PANTHER:PTHR10219:SF28	SUPFAM:SSF110004
UniParc:UPI000294EB3E	:	:	:	:	:

Description

Putative Glycolipid transfer protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G02430_001]

Coordinates

chr5:-:1536595..1542461

Molecular Weight (calculated)

19471.6 Da

IEP (calculated)

8.473

GRAVY (calculated)

0.011

Length

175 amino acids

Sequence
(BLAST)

001: MEVAPFSRAC SHVSVLFGCL GIAFKFAEMD YVAKVEDLSK ASNSISTLHS LLELDIQQDS VRQAGSHSRN LLRVKRGLDM VKILFEQILV TDGNSLRDPA
101: SKAYAKVFAP HHGWAIRKAV AAGMYALPTK AQLLKKLNED EASAKIQMEC YIRTSAPVIV YIEELFNSRQ LGIDW

Best Arabidopsis Sequence Match ( AT2G34690.1 )
(BLAST)

001: MADSEADKPL RKISAAFKKL AIIVNSPNPE VPVTQFSHAC SLVSPLFGCL GIAFKFAEMD YVAKVDDLVR ASSSISTLVV MMDKDIEADC VRKAGSHTRN
101: LLRVKRGLDM VKVLFEQIIA SEGDNSLKDP ATKSYAQVFA PHHGWAIRKA VSLGMYALPT RAHLLNMLKE DEAAAKIHMQ SYVNSSAPLI TYLDNLFLSK
201: QLGIDW

Arabidopsis Description

ACD11Accelerated cell death 11 [Source:UniProtKB/Swiss-Prot;Acc:O64587]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.