Factsheet for GSMUA_Achr9P28440_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39670.1	GSMUA_Achr11P...	AT3G60600.1	18845362
AT4G39670.1	GSMUA_Achr11P...	AT3G60600.1	18845362
AT4G39670.1	GSMUA_Achr1P20280_001	AT3G60600.1	18845362
AT4G39670.1	GSMUA_Achr5P20880_001	AT3G60600.1	18845362
AT4G39670.1	GSMUA_Achr8P11120_001	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96005	Canola	cytosol	26.05	64.37
TraesCS4D01G045300.1	Wheat	cytosol	67.91	64.04
TraesCS4B01G045400.1	Wheat	cytosol	67.91	64.04
TraesCS4A01G268800.1	Wheat	cytosol	67.91	64.04
VIT_01s0011g03390.t01	Wine grape	cytosol	62.33	63.21
Os03t0710700-00	Rice	cytosol	67.91	62.93
EER91001	Sorghum	mitochondrion	68.37	62.82
Zm00001d033718_P001	Maize	cytosol	67.91	62.13
PGSC0003DMT400028452	Potato	cytosol	58.6	61.16
Solyc12g033130.1.1	Tomato	cytosol	58.14	60.68
KRG90803	Soybean	cytosol	55.81	57.97
KRH35966	Soybean	cytosol	55.35	56.4
CDY38602	Canola	cytosol	58.6	56.0
CDX90348	Canola	cytosol	57.21	54.42
Bra010670.1-P	Field mustard	cytosol	57.21	54.42
GSMUA_Achr5P02430_001	Banana	endoplasmic reticulum, extracellular	44.19	54.29
CDY63450	Canola	cytosol	56.28	53.54
AT4G39670.1	Thale cress	cytosol	56.74	53.28
Bra033633.1-P	Field mustard	cytosol	55.35	52.42
HORVU4Hr1G007360.7	Barley	cytosol	66.05	50.9
Bra004321.1-P	Field mustard	cytosol	59.07	50.0
CDX96006	Canola	cytosol	21.4	34.59

Protein Annotations

Gene3D:1.10.3520.10	MapMan:5.4.6	InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0120009	GO:GO:0120013	EnsemblPlantsGene:GSMUA_Achr9G28440_001	EnsemblPlants:GSMUA_Achr9P28440_001
EnsemblPlants:GSMUA_Achr9T28440_001	InterPro:Glycolipid_transfer_prot_dom	InterPro:IPR036497	UniProt:M0U4A1	PFAM:PF08718	PANTHER:PTHR10219
PANTHER:PTHR10219:SF28	SUPFAM:SSF110004	UniParc:UPI0002960794	:	:	:

Description

GLTP domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G28440_001]

Coordinates

chr9:-:32436992..32444883

Molecular Weight (calculated)

23716.3 Da

IEP (calculated)

6.355

GRAVY (calculated)

-0.160

Length

215 amino acids

Sequence
(BLAST)

001: MGRESPSDDS PKVAGSATPL AAVAQAFEEL ARLLEAGSGD LRLAPFSDAC SLVSILFDSL GLAFKFAEME YVAKVNDLIE ASKTHDTLNK IIDHDLENDT
101: VRKQGSHSRN LRRVRLGLDL VKTLFEQFPS SGGCSLKEAA SNAYGQVCAP FHTWAIRKAV GAGMYALPTR EQLIVRLNET DQSVHKEMQR FINACNPIIQ
201: YIDNLFLSKK ISLDW

Best Arabidopsis Sequence Match ( AT4G39670.1 )
(BLAST)

001: MEAEVEEEEE DMFEDAVCTT QARVNTPLSV ITEAFEDLAD LVKPQRSDEI DEDELRLDDF CSACTHVSVL FNCLGFAFKF AEMEYIAKVK DLVEASKTFE
101: TLHNILDLDV EKETVKTPGS HSRNLRRVRQ GLDLIRAIFE QFLIADDYSL KDAATTAYTE VCAPFHTWAV RTAVYAGMYT LPTRDQLLLR LNETDQSVEK
201: NMRRYMEASR PIIEYIDKLY IERNIKLDW

Arabidopsis Description

ACD11 homolog protein [Source:UniProtKB/Swiss-Prot;Acc:Q8L7U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.