Factsheet for Bra033633.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 3
plastid 1
endoplasmic reticulum 1
plasma membrane 1
vacuole 1
golgi 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003423.1-P
Bra007547.1-P
Bra014481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39670.1	Bra003423.1-P	AT3G60600.1	18845362
AT4G39670.1	Bra007547.1-P	AT3G60600.1	18845362
AT4G39670.1	Bra014481.1-P	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010670.1-P	Field mustard	cytosol	92.07	92.48
AT4G39670.1	Thale cress	cytosol	80.18	79.48
Bra004321.1-P	Field mustard	cytosol	76.65	68.5
PGSC0003DMT400028452	Potato	cytosol	58.59	64.56
KRG90803	Soybean	cytosol	57.71	63.28
Solyc12g033130.1.1	Tomato	cytosol	57.27	63.11
KRH35966	Soybean	cytosol	58.15	62.56
VIT_01s0011g03390.t01	Wine grape	cytosol	55.51	59.43
TraesCS4A01G268800.1	Wheat	cytosol	55.95	55.7
TraesCS4B01G045400.1	Wheat	cytosol	55.95	55.7
TraesCS4D01G045300.1	Wheat	cytosol	55.95	55.7
GSMUA_Achr9P28440_001	Banana	cytosol	52.42	55.35
Os03t0710700-00	Rice	cytosol	55.07	53.88
EER91001	Sorghum	mitochondrion	55.07	53.42
Zm00001d033718_P001	Maize	cytosol	53.74	51.91
HORVU4Hr1G007360.7	Barley	cytosol	53.3	43.37
Bra022985.1-P	Field mustard	cytosol	26.87	41.22
Bra022038.1-P	Field mustard	cytosol	32.16	37.06
Bra022041.1-P	Field mustard	cytosol	31.28	35.32

Protein Annotations

Gene3D:1.10.3520.10	MapMan:5.4.6	EnsemblPlantsGene:Bra033633	EnsemblPlants:Bra033633.1	EnsemblPlants:Bra033633.1-P	InterPro:GLTP_sf
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0120009	GO:GO:0120013
InterPro:Glycolipid_transfer_prot_dom	InterPro:IPR036497	UniProt:M4EXU4	PFAM:PF08718	PANTHER:PTHR10219	PANTHER:PTHR10219:SF28
SUPFAM:SSF110004	UniParc:UPI000253F826	SEG:seg	:	:	:

Description

AT4G39670 (E=1e-102) | glycolipid binding / glycolipid transporter

Coordinates

chrA06:-:25901104..25901787

Molecular Weight (calculated)

26108.0 Da

IEP (calculated)

4.267

GRAVY (calculated)

-0.278

Length

227 amino acids

Sequence
(BLAST)

001: MEEEEEEEDD TFEDAVCNKT PARVNTPLSI ITEAFENLAD LLKPDIITEE DGLSLDAFCN ACTHVSVLFS CLGFAFKFAE MEYISKVNDL VEASKTLDTL
101: QNILDLDVEK DTVKTPGSRS RNLRRVRLGL DLIRAIFEKF LMTDEYSLKD AATTAYTEVC APFHTWAVRT AVYAGMYTLP TRDQLLIRLD ETEQSVEKNM
201: RRYMEASRPI VEYIDKLYIE RNIKLDW

Best Arabidopsis Sequence Match ( AT4G39670.1 )
(BLAST)

001: MEAEVEEEEE DMFEDAVCTT QARVNTPLSV ITEAFEDLAD LVKPQRSDEI DEDELRLDDF CSACTHVSVL FNCLGFAFKF AEMEYIAKVK DLVEASKTFE
101: TLHNILDLDV EKETVKTPGS HSRNLRRVRQ GLDLIRAIFE QFLIADDYSL KDAATTAYTE VCAPFHTWAV RTAVYAGMYT LPTRDQLLLR LNETDQSVEK
201: NMRRYMEASR PIIEYIDKLY IERNIKLDW

Arabidopsis Description

ACD11 homolog protein [Source:UniProtKB/Swiss-Prot;Acc:Q8L7U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.