Factsheet for PGSC0003DMT400028452

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g033130.1.1	Tomato	cytosol	97.57	97.57
CDX96005	Canola	cytosol	30.58	72.41
VIT_01s0011g03390.t01	Wine grape	cytosol	67.96	66.04
KRG90803	Soybean	cytosol	66.02	65.7
KRH35966	Soybean	cytosol	65.05	63.51
CDY38602	Canola	cytosol	67.48	61.78
Bra010670.1-P	Field mustard	cytosol	65.53	59.73
CDX90348	Canola	cytosol	65.53	59.73
CDY63450	Canola	cytosol	65.05	59.29
GSMUA_Achr9P28440_001	Banana	cytosol	61.16	58.6
Bra033633.1-P	Field mustard	cytosol	64.56	58.59
AT4G39670.1	Thale cress	cytosol	64.08	57.64
TraesCS4B01G045400.1	Wheat	cytosol	60.68	54.82
TraesCS4A01G268800.1	Wheat	cytosol	60.68	54.82
TraesCS4D01G045300.1	Wheat	cytosol	60.68	54.82
Bra004321.1-P	Field mustard	cytosol	66.02	53.54
Os03t0710700-00	Rice	cytosol	59.71	53.02
EER91001	Sorghum	mitochondrion	59.71	52.56
Zm00001d033718_P001	Maize	cytosol	58.74	51.49
PGSC0003DMT400054370	Potato	cytosol	49.03	48.1
HORVU4Hr1G007360.7	Barley	cytosol	59.22	43.73
CDX96006	Canola	cytosol	23.3	36.09

Protein Annotations

Gene3D:1.10.3520.10	EntrezGene:102583895	MapMan:5.4.6	InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0120009	GO:GO:0120013	InterPro:Glycolipid_transfer_prot_dom
InterPro:IPR036497	UniProt:M1AR47	PFAM:PF08718	EnsemblPlantsGene:PGSC0003DMG400010957	PGSC:PGSC0003DMG400010957	EnsemblPlants:PGSC0003DMT400028452
PANTHER:PTHR10219	PANTHER:PTHR10219:SF28	SUPFAM:SSF110004	UniParc:UPI000295CB6D	RefSeq:XP_006358687.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010957]

Coordinates

chr12:-:27844711..27846700

Molecular Weight (calculated)

23218.4 Da

IEP (calculated)

4.429

GRAVY (calculated)

-0.154

Length

206 amino acids

Sequence
(BLAST)

001: MDEDDEFEDA GTGTPLSAIA EAFEELSSNH DLMLKPFCHA CSYVSVLFGS LGIAFKFAEL EYVSKVRDLT EASEIFGSLN SILDYDVRND TVRTPGSLSR
101: NLRRVRQGLD LIRALFQNFL STYDDSLKEA ASMAYAKVCA PYHTWAVRTA VSAGMCALPT RDQLLIKLNE TDDSAEREMR RYIDASLPII EYIDKLYISR
201: NISLDW

Best Arabidopsis Sequence Match ( AT4G39670.1 )
(BLAST)

001: MEAEVEEEEE DMFEDAVCTT QARVNTPLSV ITEAFEDLAD LVKPQRSDEI DEDELRLDDF CSACTHVSVL FNCLGFAFKF AEMEYIAKVK DLVEASKTFE
101: TLHNILDLDV EKETVKTPGS HSRNLRRVRQ GLDLIRAIFE QFLIADDYSL KDAATTAYTE VCAPFHTWAV RTAVYAGMYT LPTRDQLLLR LNETDQSVEK
201: NMRRYMEASR PIIEYIDKLY IERNIKLDW

Arabidopsis Description

ACD11 homolog protein [Source:UniProtKB/Swiss-Prot;Acc:Q8L7U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.