Factsheet for VIT_11s0052g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g02400.t01
VIT_15s0048g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34690.1	VIT_09s0002g02400.t01	AT1G55190.1	18845362
AT2G34690.1	VIT_09s0002g02400.t01	AT3G13720.1	18845362
AT2G34690.1	VIT_15s0048g00220.t01	AT3G60600.1	18845362

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g00220.t01	Wine grape	cytosol	43.48	70.42
VIT_11s0052g00280.t01	Wine grape	cytosol	48.7	54.11
VIT_11s0052g00260.t01	Wine grape	cytosol, plastid	40.43	45.15
VIT_11s0052g00240.t01	Wine grape	cytosol	73.04	42.97
Bra022985.1-P	Field mustard	cytosol	26.96	41.89
Solyc02g070250.2.1	Tomato	cytosol	37.83	41.43
CDX84289	Canola	cytosol	18.7	41.35
PGSC0003DMT400054370	Potato	cytosol	37.39	40.95
AT2G34690.1	Thale cress	cytosol	36.52	40.78
KRH36758	Soybean	cytosol	35.22	39.32
KRH11758	Soybean	cytosol	35.22	38.94
GSMUA_Achr5P02430_001	Banana	endoplasmic reticulum, extracellular	29.57	38.86
CDX84635	Canola	cytosol, endoplasmic reticulum, peroxisome	34.78	38.84
EER90780	Sorghum	cytosol	34.35	38.35
VIT_10s0003g04580.t01	Wine grape	cytosol	33.91	38.05
CDX79572	Canola	cytosol	33.91	37.86
TraesCS5A01G423200.1	Wheat	cytosol	33.48	37.38
TraesCS5D01G431800.1	Wheat	cytosol	33.48	37.02
Os03t0784900-01	Rice	cytosol	31.74	35.27
CDX87716	Canola	cytosol	18.7	34.13
CDY43977	Canola	cytosol	18.7	34.13
Bra022038.1-P	Field mustard	cytosol	29.13	34.01
CDY43980	Canola	cytosol	28.7	32.84
Bra022041.1-P	Field mustard	cytosol	28.7	32.84
VIT_01s0011g03390.t01	Wine grape	cytosol	30.0	32.55
Zm00001d034346_P002	Maize	mitochondrion	35.22	31.4
TraesCS5B01G425200.1	Wheat	cytosol	33.04	30.65
CDX87706	Canola	cytosol	11.3	29.89
CDX87707	Canola	cytosol	17.39	29.2
HORVU5Hr1G103320.2	Barley	nucleus, plastid	33.48	26.55

Protein Annotations

Gene3D:1.10.3520.10	EntrezGene:100256464	wikigene:100256464	MapMan:5.4.6	EMBL:AM443702	ProteinID:CAN78561
ProteinID:CAN78561.1	ProteinID:CBI17898	ProteinID:CBI17898.3	ncoils:Coil	UniProt:D7SQG7	EMBL:FN594964
InterPro:GLTP_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0120009
GO:GO:0120013	InterPro:Glycolipid_transfer_prot_dom	InterPro:IPR036497	EntrezGene:LOC100256464	wikigene:LOC100256464	PFAM:PF08718
PANTHER:PTHR10219	PANTHER:PTHR10219:SF43	SUPFAM:SSF110004	UniParc:UPI0001BE123B	ArrayExpress:VIT_11s0052g00230	EnsemblPlantsGene:VIT_11s0052g00230
EnsemblPlants:VIT_11s0052g00230.t01	RefSeq:XP_002263227	RefSeq:XP_002263227.1	:	:	:

Description

No Description!

Coordinates

chr11:-:17394963..17396128

Molecular Weight (calculated)

26020.5 Da

IEP (calculated)

9.637

GRAVY (calculated)

-0.351

Length

230 amino acids

Sequence
(BLAST)

001: MSKSYTSHNM NYIKQVKTIL SSMEGKREKL LTRIADTTKE LADCVNSSTP RLEVHRLVHG CRVGYLFIGY FGPPFKFAQM ELSSKVNDLK NGARPDDTLE
101: TMIDREIEQQ CAKKPYSGSR SLIRVKRSIN MLKVMFEEML SSGENSIKGA VSKSYEQSFA AYHGWASRTA VSASLPALPT RAKLMKKLRE NEVSMTTKMQ
201: SFVDSSALLV QYIDSLFHSR ELAEELLELI

Best Arabidopsis Sequence Match ( AT2G34690.1 )
(BLAST)

001: MADSEADKPL RKISAAFKKL AIIVNSPNPE VPVTQFSHAC SLVSPLFGCL GIAFKFAEMD YVAKVDDLVR ASSSISTLVV MMDKDIEADC VRKAGSHTRN
101: LLRVKRGLDM VKVLFEQIIA SEGDNSLKDP ATKSYAQVFA PHHGWAIRKA VSLGMYALPT RAHLLNMLKE DEAAAKIHMQ SYVNSSAPLI TYLDNLFLSK
201: QLGIDW

Arabidopsis Description

ACD11Accelerated cell death 11 [Source:UniProtKB/Swiss-Prot;Acc:O64587]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.