Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- cytosol 3
- endoplasmic reticulum 6
- golgi 4
- extracellular 3
- vacuole 3
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018576.1-P | Field mustard | endoplasmic reticulum, golgi | 100.0 | 100.0 |
| CDX95000 | Canola | endoplasmic reticulum, golgi | 100.0 | 100.0 |
| CDY31105 | Canola | endoplasmic reticulum, golgi | 99.48 | 99.48 |
| CDY32159 | Canola | endoplasmic reticulum, golgi | 98.96 | 98.96 |
| CDY65544 | Canola | endoplasmic reticulum, extracellular | 93.78 | 94.76 |
| CDY39001 | Canola | endoplasmic reticulum, extracellular | 94.3 | 93.33 |
| CDY59269 | Canola | endoplasmic reticulum, extracellular | 93.78 | 92.82 |
| CDY41713 | Canola | endoplasmic reticulum, extracellular | 93.78 | 92.82 |
| CDX90955 | Canola | endoplasmic reticulum, extracellular | 91.71 | 91.71 |
| CDY22027 | Canola | endoplasmic reticulum, extracellular | 91.71 | 91.71 |
| PGSC0003DMT400007183 | Potato | endoplasmic reticulum, golgi | 91.19 | 91.19 |
| TraesCS5A01G089200.1 | Wheat | golgi | 91.19 | 91.19 |
| Os01t0338000-01 | Rice | plasma membrane | 91.19 | 91.19 |
| Solyc01g100350.2.1 | Tomato | plastid | 91.19 | 91.19 |
| AT1G09180.1 | Thale cress | extracellular | 91.19 | 91.19 |
| CDX91807 | Canola | endoplasmic reticulum, extracellular | 91.19 | 91.19 |
| TraesCS5D01G101300.1 | Wheat | golgi | 90.67 | 90.67 |
| Os12t0560300-01 | Rice | plasma membrane | 90.67 | 90.67 |
| KRG92955 | Soybean | endoplasmic reticulum, extracellular | 90.67 | 90.67 |
| KRH33832 | Soybean | endoplasmic reticulum | 90.16 | 90.16 |
| TraesCS5B01G095200.1 | Wheat | endoplasmic reticulum, extracellular | 90.16 | 90.16 |
| EES00709 | Sorghum | endoplasmic reticulum, extracellular | 90.16 | 90.16 |
| Zm00001d040752_P001 | Maize | endoplasmic reticulum, extracellular | 90.16 | 90.16 |
| TraesCS3A01G193800.1 | Wheat | golgi | 89.64 | 89.64 |
| KRG96730 | Soybean | endoplasmic reticulum | 89.64 | 89.64 |
| TraesCS3B01G221700.1 | Wheat | endoplasmic reticulum, extracellular | 89.64 | 89.64 |
| KRH68446 | Soybean | endoplasmic reticulum | 89.12 | 89.12 |
| KXG23692 | Sorghum | endoplasmic reticulum, extracellular | 89.12 | 89.12 |
| TraesCS3D01G196200.1 | Wheat | endoplasmic reticulum, extracellular | 89.12 | 89.12 |
| Os01t0254000-01 | Rice | plasma membrane | 88.08 | 88.08 |
| EES02699 | Sorghum | endoplasmic reticulum, extracellular | 87.56 | 87.56 |
| Zm00001d040278_P001 | Maize | extracellular | 87.56 | 87.56 |
| HORVU3Hr1G035000.2 | Barley | plasma membrane | 87.05 | 87.05 |
| TraesCS3A01G172900.1 | Wheat | golgi | 87.05 | 87.05 |
| TraesCS3B01G203800.1 | Wheat | endoplasmic reticulum | 87.05 | 87.05 |
| PGSC0003DMT400068658 | Potato | endoplasmic reticulum, extracellular | 86.01 | 86.01 |
| Solyc01g060130.2.1 | Tomato | endoplasmic reticulum, extracellular | 85.49 | 85.49 |
| VIT_16s0013g00170.t01 | Wine grape | cytosol | 47.15 | 84.26 |
| TraesCS3D01G179300.1 | Wheat | endoplasmic reticulum, extracellular | 87.05 | 83.58 |
| TraesCS7B01G236300.1 | Wheat | cytosol | 78.76 | 78.76 |
| TraesCS7D01G332100.1 | Wheat | endoplasmic reticulum | 78.24 | 78.24 |
| EES15193 | Sorghum | endoplasmic reticulum | 78.76 | 77.95 |
| KXG28257 | Sorghum | endoplasmic reticulum | 78.24 | 77.84 |
| HORVU7Hr1G080190.1 | Barley | endoplasmic reticulum | 77.72 | 77.72 |
| Zm00001d049068_P001 | Maize | cytosol | 77.72 | 77.32 |
| Os06t0225000-00 | Rice | endoplasmic reticulum | 76.68 | 76.29 |
| VIT_14s0060g01340.t01 | Wine grape | endoplasmic reticulum, extracellular | 80.83 | 65.82 |
| HORVU3Hr1G045150.3 | Barley | plastid | 73.58 | 63.68 |
| Zm00001d009211_P001 | Maize | mitochondrion | 90.16 | 53.21 |
| CDY07095 | Canola | endoplasmic reticulum | 91.19 | 43.03 |
| CDY36501 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.61 | 33.15 |
| CDY08727 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.61 | 33.15 |
| CDY18665 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.09 | 32.61 |
| CDY23031 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 30.57 | 32.07 |
| CDY02106 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 30.57 | 32.07 |
| CDX81307 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 30.57 | 32.07 |
| CDY43583 | Canola | cytosol | 12.44 | 31.58 |
| CDY06369 | Canola | cytosol | 29.02 | 30.77 |
| GSMUA_Achr11P... | Banana | mitochondrion, plastid | 34.2 | 27.16 |
| CDY37846 | Canola | cytosol, mitochondrion, nucleus, plastid | 17.62 | 26.56 |
| CDX68554 | Canola | cytosol | 17.1 | 25.58 |
| CDY01716 | Canola | cytosol | 27.98 | 24.0 |
| CDY01715 | Canola | cytosol | 27.98 | 24.0 |
| CDX74569 | Canola | cytosol | 27.98 | 23.89 |
| CDY22028 | Canola | nucleus | 17.62 | 16.59 |
Protein Annotations
| MapMan:22.4.2.1 | Gene3D:3.40.50.300 | GO:A0A078E072 | EnsemblPlants:CDX93520 | ProteinID:CDX93520 | ProteinID:CDX93520.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | EnsemblPlantsGene:GSBRNA2T00156190001 | InterPro:IPR006687 |
| InterPro:P-loop_NTPase | PFAM:PF00025 | PRINTS:PR00328 | PFscan:PS51422 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF165 |
| SMART:SM00177 | SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF/SAR | InterPro:Small_GTPase_SAR1 |
| TIGRFAMs:TIGR00231 | UniParc:UPI0001BA4367 | SEG:seg | : | : | : |
Description
BnaA06g05280D
Coordinates
chrLK031876:+:522790..524004
Molecular Weight (calculated)
22080.7 Da
IEP (calculated)
7.073
GRAVY (calculated)
-0.103
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLFDWFYGI LATLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFVESKREL DALLSDEALA SVPFLILGNK IDIPYAASED ELRYHLGLTN FTTGKSNVSL GESGVRPLEV FMCSIVRKMG YGEGFKWLSY YIK
101: ERFVESKREL DALLSDEALA SVPFLILGNK IDIPYAASED ELRYHLGLTN FTTGKSNVSL GESGVRPLEV FMCSIVRKMG YGEGFKWLSY YIK
001: MFLFDWFYGI LASLGLCKKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKINFKAFD LGGHQIARRV WKDCYAKVDA VVYLVDAYDR
101: DRFVESKREL DALLSDEALA NVPCLILGNK IDIPYASSED ELRYYLGLTN FTTGKGIVNL EDSGVRPLEV FMCSIVRKMG YGEGFKWLSQ YIK
101: DRFVESKREL DALLSDEALA NVPCLILGNK IDIPYASSED ELRYYLGLTN FTTGKGIVNL EDSGVRPLEV FMCSIVRKMG YGEGFKWLSQ YIK
Arabidopsis Description
ATSAR1Putative GTP-binding protein, SAR1B [Source:UniProtKB/TrEMBL;Acc:O80489]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.